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• MAEPlugin.analysis: Javadoc index of package MAEPlugin.analysis.


Package Samples:

• MAEPlugin.analysis

Classes:

• AnalysisPlugin: This class is the analysis MAEPlugin base class and is used to implement specialized base classes based on CheckBoxMenuPlugin. These include: GeneClassPlugin - manipulate Gene Sets NormalizationPlugin - normalize spot data between array samples FilterPlugin - gene data filter for inclusion in data Filter chain PlotPlugin - plot method ClusterPlugin - cluster method ReportPlugin - report method Created on September 5, 2001, 6:13 PM This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is ...
• NormalizationPlugin: This class extends the analysis MAEPlugin base class to implement the Normalization base class. The "active normalization" is a static reference that all Normalization classes share. Whichever one is active will be the one used. Created on September 7, 2001, 5:46 PM This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL ...
• FilterPlugin: This class is the filter MAEPlugin base class and is be used to implement a filter base class: Users must implement pluginInit() and geneOperation(). Users MAY overide resetPipeline() and finishPipeline(). Created on September 5, 2001, 6:13 PM, Jai Evans This work was produced by Peter Lemkin of the National Cancer Institute, an agency of the United States Government. As a work of the United States Government there is no associated copyright. It is offered as open source software under the Mozilla Public License (version 1.1) subject to the limitations noted in the accompanying LEGAL file. This ...

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