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A B C D F G I L M N P R S U

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A

accept(File, String) - Method in class MAEPlugin.popup.PluginLoader

accept() - implentation of FilenameFilter.

actionPerformed(ActionEvent) - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

actionPerformed() -

add(String) - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

 

add(Component, int, int, int, int, double, double) - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

add() - add component

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B

bDone - Variable in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog

 

bUnload - Variable in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog

 

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C

clearLists() - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

 

close(boolean) - Method in class MAEPlugin.popup.PluginUnLoader

close() - close the plugin

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D

deselectAll(List) - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

deselectAll() -

doUnMountPlugin() - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog

doUnMountPlugin() - Begin the process of unloading the plugins in question

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F

fileDialog - Variable in class MAEPlugin.popup.PluginLoader

Reference to the Dialog that will load files

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G

getPluginDescription() - Method in class MAEPlugin.popup.PluginLoader

getPluginDescription() - This returns a human readable description of the Plugin

getPluginDescription() - Method in class MAEPlugin.popup.PluginUnLoader

getPluginDescription() - This returns a human readable description of the Plugin

getRmList() - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

 

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I

ITEMS - Static variable in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

 

itemStateChanged(ItemEvent) - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

itemStateChanged() -

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L

loadPlugin(String, String) - Method in class MAEPlugin.popup.PluginLoader

loadPlugin() - tests and loads good MAEplugin.

loadPlugin(String) - Method in class MAEPlugin.popup.PluginLoader

loadPlugin() - tests and loads good MAPlugin from the path.

loadPluginSilently(String) - Method in class MAEPlugin.popup.PluginLoader

loadPluginSilently() - silently tests and loads good MAPlugin from the path.

lookUp(String) - Method in class MAEPlugin.popup.PluginUnLoader

lookUp() - finds plugin in the loaded list from MAExplorer

ltList - Variable in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

 

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M

MAEPlugin.popup - package MAEPlugin.popup

 

MAX_PLUGINS - Static variable in class MAEPlugin.popup.PluginLoader

Maximum number of MAEPlugins that may be loaded at one time

maestub - Variable in class MAEPlugin.popup.PluginUnLoader

Reference to MAE Stub

mountPlugin() - Method in class MAEPlugin.popup.PluginLoader

mountPlugin() - loads the plugin into the MAE application.

move(List, List, boolean) - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

move() -

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N

nPluginPathsList - Static variable in class MAEPlugin.popup.PluginLoader

Size of list of unique loaded plugins full path for ensuring uniqueness

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P

PluginLoader - class MAEPlugin.popup.PluginLoader.

This class contains the dynamic MAEplugin loader.

PluginLoader(MAEStub) - Constructor for class MAEPlugin.popup.PluginLoader

PluginLoader() - Creates new LoadPlugins.

PluginLoader(MAEStub, String) - Constructor for class MAEPlugin.popup.PluginLoader

PluginLoader() - Creates new LoadPlugin but do it siliently.

PluginUnLoader - class MAEPlugin.popup.PluginUnLoader.

This class contains the dynamic MAEplugin unloader for .jar files

PluginUnLoader(MAEStub) - Constructor for class MAEPlugin.popup.PluginUnLoader

PluginLoader() - Creates new LoadPlugins.

PluginUnLoader.UnloaderDialog - class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.

Class UnloaderDialog is used to select loaded plugins to unload

PluginUnLoader.UnloaderDialog(Frame) - Constructor for class MAEPlugin.popup.PluginUnLoader.UnloaderDialog

UnloaderDialog() - constructor

PluginUnLoader.UnloaderDialog(Frame, String) - Constructor for class MAEPlugin.popup.PluginUnLoader.UnloaderDialog

UnloaderDialog() - constructor

PluginUnLoader.UnloaderDialog(Frame, String, boolean) - Constructor for class MAEPlugin.popup.PluginUnLoader.UnloaderDialog

UnloaderDialog() - constructor

PluginUnLoader.UnloaderDialog.PluginList - class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList.

class PluginList was modified from Chan P.

PluginUnLoader.UnloaderDialog.PluginList() - Constructor for class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

PluginList() - constructor

PopupPlugin - class MAEPlugin.popup.PopupPlugin.

This class is used for creating popup plugins.

PopupPlugin(String) - Constructor for class MAEPlugin.popup.PopupPlugin

PopupPlugin() - Constructor to create new PopupPlugin.

PopupPlugin() - Constructor for class MAEPlugin.popup.PopupPlugin

PopupPlugin() - Constructor to create new PopupPlugin.

pHashtable - Variable in class MAEPlugin.popup.PluginUnLoader

Hashtable used to remove plugs

pList - Variable in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog

 

pluginClassName - Variable in class MAEPlugin.popup.PluginLoader

Reference to the plain name of the class to load

pluginClassName - Variable in class MAEPlugin.popup.PluginUnLoader

Reference to the plain name of the class to load

pluginMain() - Method in class MAEPlugin.popup.PluginLoader

pluginMain() - Is the method end-users implement to use the API.

pluginMain() - Method in class MAEPlugin.popup.PluginUnLoader

pluginMain() - Is the method end-users implement to use the API.

pluginObject - Variable in class MAEPlugin.popup.PluginLoader

Reference to the Object itself

pluginObject - Variable in class MAEPlugin.popup.PluginUnLoader

Reference to the Object itself

pluginPathsList - Static variable in class MAEPlugin.popup.PluginLoader

List of unique loaded plugins full path for ensuring uniqueness

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R

refreshLists() - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog

refreshLists() - called whenever the state of laded plugins needs to be refreshed.

remove(String) - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

 

replaceItem(List, String) - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

replaceItem() -

reverseSelections(List) - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

reverseSelections() -

rtList - Variable in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog.PluginList

 

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S

show() - Method in class MAEPlugin.popup.PluginUnLoader.UnloaderDialog

show() - necessary override to allow refresh of hash and lists in window

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U

unMountPlugin(String) - Method in class MAEPlugin.popup.PluginUnLoader

unMountPlugin() - unloads the plugin from the MAE application.

unloaderDialog - Variable in class MAEPlugin.popup.PluginUnLoader

Reference to the Dialog that will load files

updateCurGene(int) - Method in class MAEPlugin.popup.PluginLoader

updateCurGene() - update any data since current gene has changed.

updateCurGene(int) - Method in class MAEPlugin.popup.PluginUnLoader

updateCurGene() - update any data since current gene has changed.

updateCurGene(int) - Method in class MAEPlugin.popup.PopupPlugin

updateCurGene() - abstract method end-users must implement to use the API.

updateFilter() - Method in class MAEPlugin.popup.PluginLoader

updateFilter() - update any dependent data since Filter has changed.

updateFilter() - Method in class MAEPlugin.popup.PluginUnLoader

updateFilter() - update any dependent data since Filter has changed.

updateFilter() - Method in class MAEPlugin.popup.PopupPlugin

updateFilter() - abstract method end-users must implement to use the API.

updateLabels() - Method in class MAEPlugin.popup.PluginLoader

updateLabels() - update any dependent data since global labels have changed.

updateLabels() - Method in class MAEPlugin.popup.PluginUnLoader

updateLabels() - update any dependent data since global labels have changed.

updateLabels() - Method in class MAEPlugin.popup.PopupPlugin

updateLabels() - abstract method end-users must implement to use the API.

updateSlider() - Method in class MAEPlugin.popup.PluginLoader

updateSlider() - update any dependent data sincea threshold slider has changed.

updateSlider() - Method in class MAEPlugin.popup.PluginUnLoader

updateSlider() - update any dependent data sincea threshold slider has changed.

updateSlider() - Method in class MAEPlugin.popup.PopupPlugin

updateSlider() - abstract method end-users must implement to use the API.

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A B C D F G I L M N P R S U

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