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apollo.dataadapter.otter.parser
Class LocusTagHandler  

java.lang.Object
  apollo.dataadapter.otter.parser.TagHandler
      apollo.dataadapter.otter.parser.LocusTagHandler

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public class LocusTagHandler

extends TagHandler

I will create a new Locus when my tag is found. When I am closed, I will add myself to the current GenericAnnotationSet.

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Field Summary

 

Fields inherited from class apollo.dataadapter.otter.parser.TagHandler

ACCESSION, ASSEMBLY_END, ASSEMBLY_OFFSET, ASSEMBLY_ORI, ASSEMBLY_START, ASSEMBLY_TYPE, AUTHOR, AUTHOR_EMAIL, CDS_END_NOT_FOUND, CDS_START_NOT_FOUND, CHROMOSOME, END, EVIDENCE, EXON, FRAME, ID, INDENT, KEYWORD, LEFT, LOCUS, LOCUS_TYPE, MRNA_END_NOT_FOUND, MRNA_START_NOT_FOUND, NAME, OTTER, REMARK, RETURN, RIGHT, SEQUENCE_FRAGMENT, SEQUENCE_SET, SLASH, STABLE_ID, START, STRAND, SYNONYM, TRANSCRIPT, TRANSCRIPT_CLASS, TRANSLATION_END, TRANSLATION_START, TYPE, VERSION

 

Constructor Summary

LocusTagHandler()

 

Method Summary
java.lang.String	getFullName()
java.lang.String	getLeafName()
void	handleEndElement(OtterContentHandler theContentHandler, java.lang.String namespaceURI, java.lang.String localName, java.lang.String qualifiedName)
void	handleStartElement(OtterContentHandler theContentHandler, java.lang.String namespaceURI, java.lang.String localName, java.lang.String qualifiedName, org.xml.sax.Attributes attributes)

 

Methods inherited from class apollo.dataadapter.otter.parser.TagHandler

handleCharacters

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Constructor Detail

LocusTagHandler

public LocusTagHandler()

Method Detail

handleStartElement

public void handleStartElement(OtterContentHandler theContentHandler,
                               java.lang.String namespaceURI,
                               java.lang.String localName,
                               java.lang.String qualifiedName,
                               org.xml.sax.Attributes attributes)

Overrides:

handleStartElement in class TagHandler

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handleEndElement

public void handleEndElement(OtterContentHandler theContentHandler,
                             java.lang.String namespaceURI,
                             java.lang.String localName,
                             java.lang.String qualifiedName)

Overrides:

handleEndElement in class TagHandler

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getFullName

public java.lang.String getFullName()

Specified by:

getFullName in class TagHandler

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getLeafName

public java.lang.String getLeafName()

Specified by:

getLeafName in class TagHandler

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> apollo >> dataadapter >> otter >> [ parser overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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