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apollo.gui
Class EvidencePanel  

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  apollo.gui.ControlledPanel
                      apollo.gui.TablePanel
                          apollo.gui.EvidencePanel

All Implemented Interfaces:

javax.accessibility.Accessible, apollo.gui.event.AnnotationChangeListener, java.util.EventListener, apollo.gui.event.FeatureChangeListener, java.awt.image.ImageObserver, java.awt.MenuContainer, apollo.gui.event.ResultChangeListener, java.io.Serializable

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public class EvidencePanel

extends TablePanel

implements apollo.gui.event.AnnotationChangeListener, apollo.gui.event.ResultChangeListener, apollo.gui.event.FeatureChangeListener

A panel containing a table of selected result feature sets. extends TablePanel extends ControlledPanel extends JPanel Puts a JSplitPane in its JPanel. TablePanel's JScrollPane pane is on the left side of JSplitPane, constructs a SetDetailPanel and puts that in the right hand side. (This is currently shown at the bottom of the main apollo frame)

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Nested Class Summary
private  class	EvidencePanel.ApolloFeatureSelectionListener           Inner class for listening for feature selections.

 

Nested classes inherited from class apollo.gui.TablePanel

TablePanel.CellRenderer, TablePanel.CopyMouseListener, TablePanel.FilteredFeatureModel, TablePanel.MegaComparator, TablePanel.RowSelectionListener, TablePanel.SortMouseListener, TablePanel.TypeCellRenderer

 

Nested classes inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

 

Nested classes inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

 

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

 

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

 

Field Summary
static java.util.Vector	annot_columns
(package private)  EvidencePanel.ApolloFeatureSelectionListener	featureSelectionListener
static java.util.Vector	result_columns
(package private)  SetDetailPanel	sdp
(package private)  javax.swing.JSplitPane	split

 

Fields inherited from class apollo.gui.TablePanel

controller, model, pane, table, tableData

 

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

 

Fields inherited from class java.awt.Container

 

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

 

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

 

Constructor Summary

EvidencePanel(Controller c, SelectionManager sm)

 

Method Summary
EvidencePanel.ApolloFeatureSelectionListener	getFeatureSelectionListener()
boolean	handleAnnotationChangeEvent(apollo.gui.event.AnnotationChangeEvent evt)
boolean	handleFeatureChangeEvent(apollo.gui.event.FeatureChangeEvent evt)
boolean	handleResultChangeEvent(apollo.gui.event.ResultChangeEvent evt)
private  boolean	haveScore(java.util.Vector feature_list)
private  void	init()
private  boolean	isCodon(apollo.datamodel.SeqFeatureI sf)
protected  void	populateTable(java.util.Vector feature_list)
void	reset()
void	setOrientation(int newOrientation)
void	setToFeature(apollo.datamodel.SeqFeatureI feature)
protected  void	showChangedFeature(apollo.datamodel.SeqFeatureI sf)

 

Methods inherited from class apollo.gui.TablePanel

getController, getSelectionManager, isSelectionSource, selectFeature, setController

 

Methods inherited from class apollo.gui.ControlledPanel

addNotify, getControllerWindow, needsAutoRemoval

 

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

 

Methods inherited from class javax.swing.JComponent

addAncestorListener, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

 

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusDownCycle, validate, validateTree

 

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

 

Field Detail

sdp

SetDetailPanel sdp

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split

javax.swing.JSplitPane split

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featureSelectionListener

EvidencePanel.ApolloFeatureSelectionListener featureSelectionListener

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annot_columns

public static java.util.Vector annot_columns

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result_columns

public static java.util.Vector result_columns

Constructor Detail

EvidencePanel

public EvidencePanel(Controller c,
                     SelectionManager sm)

Method Detail

init

private void init()

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reset

public void reset()

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populateTable

protected void populateTable(java.util.Vector feature_list)

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setToFeature

public void setToFeature(apollo.datamodel.SeqFeatureI feature)

Overrides:

setToFeature in class TablePanel

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setOrientation

public void setOrientation(int newOrientation)

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haveScore

private boolean haveScore(java.util.Vector feature_list)

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handleAnnotationChangeEvent

public boolean handleAnnotationChangeEvent(apollo.gui.event.AnnotationChangeEvent evt)

Specified by:

handleAnnotationChangeEvent in interface apollo.gui.event.AnnotationChangeListener

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handleResultChangeEvent

public boolean handleResultChangeEvent(apollo.gui.event.ResultChangeEvent evt)

Specified by:

handleResultChangeEvent in interface apollo.gui.event.ResultChangeListener

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handleFeatureChangeEvent

public boolean handleFeatureChangeEvent(apollo.gui.event.FeatureChangeEvent evt)

Specified by:

handleFeatureChangeEvent in interface apollo.gui.event.FeatureChangeListener

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showChangedFeature

protected void showChangedFeature(apollo.datamodel.SeqFeatureI sf)

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isCodon

private boolean isCodon(apollo.datamodel.SeqFeatureI sf)

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getFeatureSelectionListener

public EvidencePanel.ApolloFeatureSelectionListener getFeatureSelectionListener()

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> apollo >> [ gui overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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