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apollo.gui.annotinfo
Class TranscriptEditPanel  

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  apollo.gui.annotinfo.FeatureEditPanel
                      apollo.gui.annotinfo.TranscriptEditPanel

All Implemented Interfaces:

javax.accessibility.Accessible, java.util.EventListener, java.awt.event.FocusListener, java.awt.image.ImageObserver, javax.swing.event.ListSelectionListener, java.awt.MenuContainer, java.io.Serializable

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class TranscriptEditPanel

extends FeatureEditPanel

A JPanel to display Transcript info. Used by FeatureEditorDialog. Fields disabled if read only. No CommentEditPanel if read only (transcript comments show up in FeatureEditPanel's panel) Currently its featureList(in superclass FeatureEditPanel) expects cloned transcripts. Perhaps this should be changed to take real transcripts to be consistent with the gene featureList.

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Nested Class Summary

 

Nested classes inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

 

Nested classes inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

 

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

 

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

 

Field Summary
(package private)  java.awt.Color	bgColor
(package private)  CommentEditPanel	commentPanel
protected  apollo.datamodel.GenericAnnotationSetI	current_feature
(package private)  javax.swing.JPanel	dataPanel
protected  java.lang.String	feature_type
(package private)  javax.swing.JPanel	featureButtonPanel
protected  FeatureEditorDialog	featureEditorDialog
(package private)  javax.swing.JLabel	featureListLabel
(package private)  javax.swing.JPanel	featureListPanel
(package private)  javax.swing.JScrollPane	featureListScroll
(package private)  ReadWriteField	featureNameField
protected  java.util.Vector	features
(package private)  ReadWriteField	featureSynonymField
(package private)  javax.swing.JPanel	fieldsPanel
(package private)  javax.swing.JCheckBox	finishedCheckbox
(package private)  javax.swing.JCheckBox	isProblematicCheckbox
protected  boolean	isReadOnly
(package private)  boolean	lockFocus
(package private)  javax.swing.JLabel	ownerLabel
protected  apollo.datamodel.GenericAnnotationSetI	real_feature
(package private)  javax.swing.JLabel	translationNameLabel
(package private)  javax.swing.JLabel	translationSynonymLabel
(package private)  javax.swing.JPanel	uppers

 

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

 

Fields inherited from class java.awt.Container

 

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

 

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

 

Constructor Summary
(package private)	TranscriptEditPanel(FeatureEditorDialog featureEditorDialog, boolean isReadOnly)

 

Method Summary
protected  void	attachListeners()
(package private)  void	clearFields()
void	focusGained(java.awt.event.FocusEvent e)           FocusListener
void	focusLost(java.awt.event.FocusEvent e)           updates transcript objects when one of the text // fields is unfocused - from FocusListener
protected  java.awt.Color	getBackgroundColor()
protected  javax.swing.JList	getFeatureList()
(package private)  java.util.Vector	getListData()
(package private)  apollo.datamodel.GenericAnnotationSetI	getSelectedFeature()
protected  javax.swing.JLabel	initLabel(java.lang.String text)
protected  void	jbInit()
protected  void	loadSelectedFeature()
protected  java.awt.GridBagConstraints	makeConstraintAt(int x, int y, int padamt, boolean fill)
private  void	setFinished(apollo.datamodel.GenericAnnotationSetI current_feature, boolean finished)
(package private)  void	setListData(java.util.Vector in, apollo.datamodel.GenericAnnotationSetI feature)
protected static java.lang.String	trimFirstAndLast(java.lang.String in)           cuts the first and last character off a string
(package private)  void	updateFeature()
void	valueChanged(javax.swing.event.ListSelectionEvent e)           loads Transcripts into GUI as they are selected from list from ListSelectionListener

 

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

 

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

 

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusDownCycle, validate, validateTree

 

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

 

Field Detail

translationNameLabel

javax.swing.JLabel translationNameLabel

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translationSynonymLabel

javax.swing.JLabel translationSynonymLabel

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ownerLabel

javax.swing.JLabel ownerLabel

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finishedCheckbox

javax.swing.JCheckBox finishedCheckbox

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features

protected java.util.Vector features

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feature_type

protected java.lang.String feature_type

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real_feature

protected apollo.datamodel.GenericAnnotationSetI real_feature

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current_feature

protected apollo.datamodel.GenericAnnotationSetI current_feature

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featureEditorDialog

protected FeatureEditorDialog featureEditorDialog

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featureListLabel

javax.swing.JLabel featureListLabel

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featureListPanel

javax.swing.JPanel featureListPanel

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featureListScroll

javax.swing.JScrollPane featureListScroll

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featureButtonPanel

javax.swing.JPanel featureButtonPanel

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commentPanel

CommentEditPanel commentPanel

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isProblematicCheckbox

javax.swing.JCheckBox isProblematicCheckbox

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fieldsPanel

javax.swing.JPanel fieldsPanel

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bgColor

java.awt.Color bgColor

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featureSynonymField

ReadWriteField featureSynonymField

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featureNameField

ReadWriteField featureNameField

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uppers

javax.swing.JPanel uppers

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dataPanel

javax.swing.JPanel dataPanel

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lockFocus

boolean lockFocus

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isReadOnly

protected boolean isReadOnly

Constructor Detail

TranscriptEditPanel

TranscriptEditPanel(FeatureEditorDialog featureEditorDialog,
                    boolean isReadOnly)

Method Detail

attachListeners

protected void attachListeners()

Overrides:

attachListeners in class FeatureEditPanel

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jbInit

protected void jbInit()

Overrides:

jbInit in class FeatureEditPanel

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clearFields

void clearFields()

Overrides:

clearFields in class FeatureEditPanel

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loadSelectedFeature

protected void loadSelectedFeature()

Overrides:

loadSelectedFeature in class FeatureEditPanel

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updateFeature

void updateFeature()

Overrides:

updateFeature in class FeatureEditPanel

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setFinished

private void setFinished(apollo.datamodel.GenericAnnotationSetI current_feature,
                         boolean finished)

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setListData

void setListData(java.util.Vector in,
                 apollo.datamodel.GenericAnnotationSetI feature)

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getListData

java.util.Vector getListData()

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getFeatureList

protected javax.swing.JList getFeatureList()

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valueChanged

public void valueChanged(javax.swing.event.ListSelectionEvent e)

loads Transcripts into GUI as they are selected from list from ListSelectionListener

Specified by:

valueChanged in interface javax.swing.event.ListSelectionListener

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makeConstraintAt

protected java.awt.GridBagConstraints makeConstraintAt(int x,
                                                       int y,
                                                       int padamt,
                                                       boolean fill)

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getSelectedFeature

apollo.datamodel.GenericAnnotationSetI getSelectedFeature()

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focusLost

public void focusLost(java.awt.event.FocusEvent e)

updates transcript objects when one of the text // fields is unfocused - from FocusListener

Specified by:

focusLost in interface java.awt.event.FocusListener

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focusGained

public void focusGained(java.awt.event.FocusEvent e)

FocusListener

Specified by:

focusGained in interface java.awt.event.FocusListener

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initLabel

protected javax.swing.JLabel initLabel(java.lang.String text)

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trimFirstAndLast

protected static java.lang.String trimFirstAndLast(java.lang.String in)

cuts the first and last character off a string

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getBackgroundColor

protected java.awt.Color getBackgroundColor()

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> apollo >> gui >> [ annotinfo overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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