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Class Summary |
| ArrayDrawer |
Class for Drawing A Colored Grid Representation of a Data Matrix. |
| ArrayNameView |
Renders the names of the arrays. |
| ATRView |
Draws an array tree to show the relations between arrays This object requires
a MapContainer to figure out the offsets for the arrays. |
| ATRZoomView |
Draws an array tree to show the relations between arrays This object requires
a MapContainer to figure out the offsets for the arrays. |
| ColorBarExportPanel |
This class is a superclass which implements a GUI for selection of options relating
to output. |
| ColorExtractor |
The purpose of this class is to convert a data value into a color. |
| ColorExtractorEditor |
This class allows editing of a color set... |
| ColorPresetEditor |
This class allows graphical editing of ColorPresets Also included is a class
to pop up a configuration window. |
| ColorPresets |
This class encapsulates a list of Color presets. |
| ColorSet |
This class represents a set of colors which can be used by a color extractor to translate data values into colors. |
| ColorSetEditor |
This class allows editing of a color set... |
| ContrastSelector |
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| DendroPSWriter |
Class which outputs a postscript version of a DataModel
You need to create an xMap and yMap which define the
relation between array indexes and points. |
| DendroView |
This class encapsulates a dendrogram view, which is the classic Eisen
treeview. |
| ExportPanel |
This class is a superclass which implements a GUI for selection of options relating to output. |
| FillMap |
maps integers (gene index) to pixels, filling available pixels |
| FixedMap |
Maps integers (gene index) to pixels using a fixed scale |
| FontSelector |
Allows selection of fonts for a FontSelectable |
| FontSettingsPanel |
This class allows selection of Fonts for a FontSelectable. |
| FUOptionsPanel |
This class allows selection of Font and Url options. |
| GifColorBarExportPanel |
Subclass of ColorBarExportPanel which outputs a gif version of color bar scale |
| GifExportPanel |
Subclass of ExportPanel which outputs a postscript version of a DendroView. |
| GlobalView |
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| GTRView |
Draws a gene tree to show the relations between genes
This object requires a MapContainer to figure out the offsets for the genes. |
| HeaderSummaryPanel |
enables editing of a headerSummary object. |
| IntegerMap |
This class is a contract for maps between indexes and pixels. |
| InvertedTreeDrawer |
Class for drawing ATR-style inverted trees |
| KnnArrayDrawer |
Class for Drawing PixelViews. |
| KnnDendroView |
This class encapsulates a dendrogram view, which is the classic Eisen
treeview. |
| LeftTreeDrawer |
Class for drawing GTR-style trees rooted on the left |
| MapContainer |
MapContainers tell the views which pixel offset to draw each array or gene index at. |
| MapSelector |
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| NullMap |
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| PixelSettingsSelector |
A popup to allow interactive changing of the pixel scaling and
contrast settings of an array view. |
| PostscriptColorBarExportPanel |
Subclass of ColorBarExportPanel which outputs a gif version of color bar scale |
| PostscriptExportPanel |
Subclass of ExportPanel which outputs a postscript version of a DendroView. |
| PostScriptMaker |
This class is designed to save lists of genes to a file. |
| PpmExportPanel |
Subclass of ExportPanel which outputs a postscript version of a DendroView. |
| SimpleDataMatrix |
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| SummaryPanel |
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| SummaryViewWizard |
this class exposes a GUI for configuring a summary view. |
| TestColorBarExportPanel |
Internal test class, used only by main test case. |
| TestExportPanel |
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| TextView |
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| TreeColorer |
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| TreeDrawer |
Class for Drawing and Manipulating Trees |
| ZoomView |
Implements zoomed in view of the data array |