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edu.stanford.genetics.treeview.dendroview
Class KnnDendroView  

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  edu.stanford.genetics.treeview.DragGridPanel
                      edu.stanford.genetics.treeview.dendroview.DendroView
                          edu.stanford.genetics.treeview.dendroview.KnnDendroView

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.event.ComponentListener, edu.stanford.genetics.treeview.ConfigNodePersistent, java.awt.event.ContainerListener, java.util.EventListener, java.awt.event.FocusListener, java.awt.image.ImageObserver, edu.stanford.genetics.treeview.MainPanel, java.awt.MenuContainer, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.util.Observer, java.io.Serializable

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public class KnnDendroView

extends DendroView

implements edu.stanford.genetics.treeview.ConfigNodePersistent, edu.stanford.genetics.treeview.MainPanel, java.util.Observer

This class encapsulates a dendrogram view, which is the classic Eisen treeview. It uses a drag grid panel to lay out a bunch of linked visualizations of the data, a la Eisen. In addition to laying out components, it also manages the GlobalZoomMap. This is necessary since both the GTRView (gene tree) and KnnGlobalView need to know where to lay out genes using the same map. The zoom map is managed by the ViewFrame- it represents the selected genes, and potentially forms a link between different views, only one of which is the KnnDendroView.

Version:

$Revision: 1.10 $ $Date: 2003/09/23 17:43:47 $

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Nested Class Summary

 

Nested classes inherited from class edu.stanford.genetics.treeview.dendroview.DendroView

DendroView.ButtonPanel, DendroView.GlobalGifExportWizard

 

Nested classes inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

 

Nested classes inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

 

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

 

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

 

Field Summary
private  edu.stanford.genetics.treeview.model.KnnModel	knnModel

 

Fields inherited from class edu.stanford.genetics.treeview.dendroview.DendroView

arrayDrawer, arraynameview, atrview, atrzview, browserControl, cdtSelection, colorExtractor, dataModel, fileMru, globalview, globalXmap, globalXscrollbar, globalYmap, globalYscrollbar, gtrview, hintpanel, invertedTreeDrawer, leftTreeDrawer, loaded, panes, root, settingsFrame, settingsPanel, statuspanel, textview, viewFrame, windowActive, zoomview, zoomXmap, zoomXscrollbar, zoomYmap, zoomYscrollbar

 

Fields inherited from class edu.stanford.genetics.treeview.DragGridPanel

 

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

 

Fields inherited from class java.awt.Container

 

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

 

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

 

Constructor Summary

KnnDendroView(edu.stanford.genetics.treeview.model.KnnModel tVModel, edu.stanford.genetics.treeview.ViewFrame vFrame)           Constructor for the KnnDendroView object

 

Method Summary
protected  void	setupViews()           This method should be called only during initial setup of the modelview It sets up the views and binds them all to config nodes.

 

Methods inherited from class edu.stanford.genetics.treeview.dendroview.DendroView

addView, bindConfig, bindTrees, exportGif, getCdtSelection, getConfigNode, getContrast, getDataModel, getGlobalXmap, getGlobalYmap, getModel, getViewFrame, getZoomXmap, getZoomYmap, populateAnalysisMenu, populateExportMenu, populateSettingsMenu, scrollToIndex, setCdtSelection, setDataModel, setViewFrame, showSummaryWindow, syncConfig, update, windowActive

 

Methods inherited from class edu.stanford.genetics.treeview.DragGridPanel

addComponent, addComponent, componentAdded, componentHidden, componentMoved, componentRemoved, componentResized, componentShown, doLayout, focusGained, focusLost, getBorderHeight, getBorderWidth, getFocusHeight, getFocusWidth, getHeights, getMinimumHeight, getMinimumWidth, getPreferredSize, getWidths, isAdjustable, mouseClicked, mouseDragged, mouseEntered, mouseExited, mouseMoved, mousePressed, mouseReleased, paintComponent, removeComponent, setAdjustable, setBorderHeight, setBorderWidth, setFocusHeight, setFocusWidth, setHeights, setMinimumHeight, setMinimumWidth, setWidths, toString

 

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

 

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addPropertyChangeListener, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getGraphics, getHeight, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isMaximumSizeSet, isMinimumSizeSet, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isPreferredSizeSet, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFont, setForeground, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

 

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setLayout, transferFocusDownCycle, validate, validateTree

 

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, transferFocus, transferFocusBackward, transferFocusUpCycle

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

 

Methods inherited from interface edu.stanford.genetics.treeview.ConfigNodePersistent

bindConfig

 

Methods inherited from interface edu.stanford.genetics.treeview.MainPanel

getConfigNode, populateAnalysisMenu, populateExportMenu, populateSettingsMenu, scrollToIndex, syncConfig

 

Methods inherited from interface java.util.Observer

update

 

Field Detail

knnModel

private edu.stanford.genetics.treeview.model.KnnModel knnModel

Constructor Detail

KnnDendroView

public KnnDendroView(edu.stanford.genetics.treeview.model.KnnModel tVModel,
                     edu.stanford.genetics.treeview.ViewFrame vFrame)

Constructor for the KnnDendroView object

Method Detail

setupViews

protected void setupViews()

This method should be called only during initial setup of the modelview It sets up the views and binds them all to config nodes.

Overrides:

setupViews in class DendroView

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> edu >> stanford >> genetics >> treeview >> [ dendroview overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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