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Package edu.stanford.genetics.treeview.karyoview
| Class Summary | |
| Averager | this base class doesn't actually average. |
| Chromosome | represents the loci in just one chromosome... |
| ChromosomeLoci | this class encapsulates the position of things. |
| ChromosomeLocus | The purpose of this class is purely to hold information about the location of various loci. |
| CircularChromosome | |
| CoordinatesPresetEditor | This class allows graphical editing of ColorPresets Also included is a class to pop up a configuration window. |
| CoordinatesPresets | This class encapsulates a list of Coordinates presets, which is really just FileSets. |
| CoordinatesSettingsPanel | |
| DisplaySettingsPanel | |
| FileSetEditor | This class allows editing of a file set... |
| Genome | this class encapsulates the position of things. |
| GifKaryoViewExportPanel | |
| GroupAverager | encapsulates routines common to averagers of groups of things |
| IntervalAverager | average all points which are closer than width/2 units away. |
| KaryoColorPresetEditor | This class allows graphical editing of KaryoColorPresets Also included is a class to pop up a configuration window. |
| KaryoColorPresets | This class encapsulates a list of KaryoColorSet presets. |
| KaryoColorSet | color set for karyoscope view |
| KaryoDrawer | This is observable because it signals changes to the drawer it is an observer of the selection. |
| KaryoExportPanel | This class is a superclass which implements a GUI for selection of options relating to output. |
| KaryoPanel | This class encapsulates a dendrogram view, which is the classic Eisen treeview. |
| KaryoView | This class is a model view that displays the karyoscope view for a single experiment in the dataset. |
| KaryoViewExportPanel | This class is a superclass which implements a GUI for selection of options relating to output. |
| KaryoViewParameterPanel | This class graphically represents the state of the KaryoView, and allows the user to muck with it. |
| LinearChromosome | |
| NearestAverager | average k-nearest neighbors of point. |
| NeighborAverager | average by neighbors. |
| TestExportPanel | |
| Exception Summary | |
| KaryoParseException | just for parsing chromosome info... |
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