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A

Alert - class gov.lanl.Web.Alert.: Class declaration
Alert() - Constructor for class gov.lanl.Web.Alert: Default Constructor
ArcIMSMapBuilder - class gov.lanl.Web.ArcIMSMapBuilder.: Class declaration
ArcIMSMapBuilder() - Constructor for class gov.lanl.Web.ArcIMSMapBuilder: ArcIMSMapBuilder() implements the parameterless constructor of the class ArcIMSMapBuilder.
ArcIMSMapBuilder(String, int, String, String) - Constructor for class gov.lanl.Web.ArcIMSMapBuilder: ArcIMSMapBuilder() implements the constructor of the class ArcIMSMapBuilder.
action - Variable in class gov.lanl.Web.JClassReport
action - Variable in class gov.lanl.Web.JFreeChartReport
action - Variable in class gov.lanl.Web.KCReport
action - Variable in class gov.lanl.Web.WebDriver
addContent(Content[]) - Method in class gov.lanl.Web.Content: Add an array of content
addContent(Content) - Method in class gov.lanl.Web.Content: Add content and try to attach to appropriate container
addContent(Content, StringTokenizer, String) - Static method in class gov.lanl.Web.ContentHandler: Build Content recursively from elements of StringTokenizer
addElements(NodeList, Vector) - Method in class gov.lanl.Web.XQLQuery: Recursively extract all non-empty leaves into Vector v ignoring Attributes of children
addField(String) - Method in class gov.lanl.Web.Laboratory: Add a field for display
addField(String) - Method in class gov.lanl.Web.SyndromeReport: add field for display
addFilter(String) - Static method in class gov.lanl.Web.ContentHandler: Add filter to list
addFilter(String) - Method in class gov.lanl.Web.PIDSHandler: Add filter to list
addFilters(String[]) - Static method in class gov.lanl.Web.ContentHandler: add filter list for keys in request object skip all keys containing substring of filter
addFilters(String[]) - Method in class gov.lanl.Web.PIDSHandler: add filter list for keys in request object skip all keys containing substring of filter
addKey(String, Vector) - Method in class gov.lanl.Web.CSVTable: Add column to table for specified label
addProfile() - Method in class gov.lanl.Web.UserMgr: Add the user profile
addPropertyChangeListener(PropertyChangeListener) - Method in class gov.lanl.Web.COAS: add a Property Change Listener
addPropertyChangeListener(PropertyChangeListener) - Method in class gov.lanl.Web.Content
addPropertyChangeListener(PropertyChangeListener) - Method in class gov.lanl.Web.Immunize
addPropertyChangeListener(PropertyChangeListener) - Method in class gov.lanl.Web.JClassReport: add Property Change Listener
addPropertyChangeListener(PropertyChangeListener) - Method in class gov.lanl.Web.JFreeChartReport: add Property Change Listener
addPropertyChangeListener(PropertyChangeListener) - Method in class gov.lanl.Web.KCReport: Method declaration
addPropertyChangeListener(PropertyChangeListener) - Method in class gov.lanl.Web.Laboratory
addPropertyChangeListener(PropertyChangeListener) - Method in class gov.lanl.Web.Pids: Add a Property Change Listener for the JavaBean
addPropertyChangeListener(PropertyChangeListener) - Method in class gov.lanl.Web.PidsFields
addQualifier(Content) - Method in class gov.lanl.Web.Content: add qualifier to this content object
addRow(Vector) - Method in class gov.lanl.Web.CSVTable: add a row to the table the input vector must have the same number of elements (or less) as columns and the contents must be Strings.
addTrait(Trait) - Method in class gov.lanl.Web.Pids: add Trait to currentId
addTrait(String, Trait) - Method in class gov.lanl.Web.Pids: Add Trait to id
addTrait(Trait) - Method in class gov.lanl.Web.Trait: Add a trait to the vector of contained traits
addUser(String) - Method in class gov.lanl.Web.UserMgr: addUser
addUser(String, String, String, String, String, String) - Method in class gov.lanl.Web.UserMgr: add User to the Persistent Hashtable
addUser(User) - Method in class gov.lanl.Web.UserMgr: Add a User already constructed
addUsers() - Method in class gov.lanl.Web.UserMgr: add Users from previously defined userfile
addUsers(String) - Method in class gov.lanl.Web.UserMgr: Add users from an input file
addValue(String) - Method in class gov.lanl.Web.Trait: Add a value to the list of values for this trait
addValue(String, int) - Method in class gov.lanl.Web.Trait: Add a value to a particular location in the list
advanceIndex() - Method in class gov.lanl.Web.CSV2DOM.CharacterIterator: Return the index into the string of the next character to be returned, then advance the index by one.
alertNames - Variable in class gov.lanl.Web.Alert
alerts - Variable in class gov.lanl.Web.Alert
anyObsDataSeq - Variable in class gov.lanl.Web.COAS
appServerHost - Variable in class gov.lanl.Web.ArcIMSMapBuilder: the ARCIMS Application Server's host name
appServerLink - Variable in class gov.lanl.Web.ArcIMSMapBuilder
appServerPort - Variable in class gov.lanl.Web.ArcIMSMapBuilder: the ARCIMS Application Server's map port
appServerService - Variable in class gov.lanl.Web.ArcIMSMapBuilder: the ARCIMS Application Server's service name
applyTypes(Node, HashMap) - Method in class gov.lanl.Web.CSV2CORBA: Recursive method to add type attributes to a DOM hierarchy, using the given map to indicate the attribute value to use for each Element of a given name.
applyXSL(String, String[]) - Method in class gov.lanl.Web.Content: get proper Document translated by xsl stylesheet
arcXMLImageRequestFooter1 - Variable in class gov.lanl.Web.ArcIMSMapBuilder: the ArcXML image request footer structure part 1; that block is followed by the image size definition (e.g., "\n") plus the second footer part
arcXMLImageRequestFooter2 - Variable in class gov.lanl.Web.ArcIMSMapBuilder: the ArcXML image request footer structure part 2
arcXMLImageRequestHeader - Variable in class gov.lanl.Web.ArcIMSMapBuilder: the ArcXML image request header structure
authenticate() - Method in class gov.lanl.Web.Login: authenticate the user by checking the password
authorityId - Variable in class gov.lanl.Web.HL72CORBA

B

BaselineDataSource - class gov.lanl.Web.BaselineDataSource.: Generates control chart baseline graph
BaselineDataSource(String) - Constructor for class gov.lanl.Web.BaselineDataSource
barWidth - Variable in class gov.lanl.Web.JClassHistoryChart
bos - Variable in class gov.lanl.Web.FileHandler

C

CHART_COLORS - Static variable in class gov.lanl.Web.JFreeChartGenericChart
CHART_DAY - Static variable in class gov.lanl.Web.JFreeChartGenericChart
CHART_INTERVAL - Static variable in class gov.lanl.Web.SummaryChartDaemon
CHART_MONTH - Static variable in class gov.lanl.Web.JFreeChartGenericChart
CHART_MONTH_AVERAGE - Static variable in class gov.lanl.Web.JFreeChartGenericChart
CHART_MONTH_SUM - Static variable in class gov.lanl.Web.JFreeChartGenericChart
CHART_TYPE - Static variable in class gov.lanl.Web.SummaryChartDaemon
CHART_WEEK - Static variable in class gov.lanl.Web.JFreeChartGenericChart
CHART_WEEK_AVERAGE - Static variable in class gov.lanl.Web.JFreeChartGenericChart
CHART_WEEK_SUM - Static variable in class gov.lanl.Web.JFreeChartGenericChart
COAS - class gov.lanl.Web.COAS.: Java bean for connecting to COAS server and saving and retrieving data
COAS() - Constructor for class gov.lanl.Web.COAS: Creates new COAS
COAS(String) - Constructor for class gov.lanl.Web.COAS: Constructor which initializes connection to server
CSV2CORBA - class gov.lanl.Web.CSV2CORBA.: Translate CSV data to CORBA.
CSV2CORBA(ConfigProperties) - Constructor for class gov.lanl.Web.CSV2CORBA
CSV2DOM - class gov.lanl.Web.CSV2DOM.: Converts a CSV file (with the first line containing field headers) into a DOM document of the following form: ...assuming the file contains the fields A, B, and C.
CSV2DOM(InputStream) - Constructor for class gov.lanl.Web.CSV2DOM: Constructor fron input stream
CSV2DOM(String[]) - Constructor for class gov.lanl.Web.CSV2DOM: Constructor based on String Array
CSV2DOM.CharacterIterator - class gov.lanl.Web.CSV2DOM.CharacterIterator.: Gets the characters from a string in order.
CSV2DOM.CharacterIterator(String) - Constructor for class gov.lanl.Web.CSV2DOM.CharacterIterator
CSVTable - class gov.lanl.Web.CSVTable.: Assemble comma delimited table into column arrays Assumes labels are in first row and values are in subsequent rows Also supports conversion of file into XML Document row by row with configurable XML types, cf.
CSVTable() - Constructor for class gov.lanl.Web.CSVTable: Default constructor
CSVTable(String, String) - Constructor for class gov.lanl.Web.CSVTable: Construct CVSTable from file containing comma delimited entries specifying the properties file
CSVTable(String) - Constructor for class gov.lanl.Web.CSVTable: Constructor to use default properties file
CollectData - class gov.lanl.Web.CollectData.: Collect local data, transform it and send off to the appropriate servers periodically
CollectData(ConfigProperties) - Constructor for class gov.lanl.Web.CollectData
CollectData(ResourceBundle) - Constructor for class gov.lanl.Web.CollectData
Content - class gov.lanl.Web.Content.: COAS ObservationDataStruct container bean This class facilitiates the incremental construction of the tree of data that makes up the ObservationDataStruct.
Content() - Constructor for class gov.lanl.Web.Content: Creates new Content
Content(ObservationDataStruct) - Constructor for class gov.lanl.Web.Content: Construct content from ObservationDataStruct
ContentHandler - class gov.lanl.Web.ContentHandler.: Static class to parse the Servlet request into the appropriate Content hierarchy with the ability to filter out certain of the request keys and assuming that elements are separated by a particular string
ContentHandler() - Constructor for class gov.lanl.Web.ContentHandler
CountsDaemon - class gov.lanl.Web.CountsDaemon.: Background task that maintains a database of counts per syndrome per system per day.
CountsDaemon(int) - Constructor for class gov.lanl.Web.CountsDaemon
c - Variable in class gov.lanl.Web.Immunize
c - Variable in class gov.lanl.Web.Laboratory
c - Variable in class gov.lanl.Web.SyndromeReport
cat - Variable in class gov.lanl.Web.Alert
cat - Static variable in class gov.lanl.Web.ArcIMSMapBuilder: Log4j Category class for output
cat - Static variable in class gov.lanl.Web.COAS
cat - Static variable in class gov.lanl.Web.CSV2CORBA
cat - Variable in class gov.lanl.Web.CSV2DOM
cat - Static variable in class gov.lanl.Web.CSVTable
cat - Static variable in class gov.lanl.Web.CollectData
cat - Static variable in class gov.lanl.Web.Content
cat - Static variable in class gov.lanl.Web.ContentHandler
cat - Static variable in class gov.lanl.Web.HL72CORBA
cat - Static variable in class gov.lanl.Web.Immunize
cat - Static variable in class gov.lanl.Web.JClassChart
cat - Static variable in class gov.lanl.Web.JClassHistoryChart: Log4j Category object
cat - Static variable in class gov.lanl.Web.JClassReport
cat - Static variable in class gov.lanl.Web.JFreeChartGenericChart
cat - Static variable in class gov.lanl.Web.JFreeChartHistoryChart: Log4j Category object
cat - Static variable in class gov.lanl.Web.JFreeChartReport
cat - Static variable in class gov.lanl.Web.KCHistoryChart: Log4j Category object
cat - Static variable in class gov.lanl.Web.KCReport
cat - Static variable in class gov.lanl.Web.Laboratory
cat - Static variable in class gov.lanl.Web.LoadCoas
cat - Static variable in class gov.lanl.Web.Login
cat - Variable in class gov.lanl.Web.PIDSHandler: Log4j Category for logging
cat - Static variable in class gov.lanl.Web.Pids
cat - Static variable in class gov.lanl.Web.PidsFields
cat - Static variable in class gov.lanl.Web.QualifiedPersonId_
cat - Static variable in class gov.lanl.Web.SyndromeReport
cat - Variable in class gov.lanl.Web.TabletoDOM
cat - Static variable in class gov.lanl.Web.TimeSpan_
cat - Static variable in class gov.lanl.Web.Trait: log4j Category used for logging
cat - Static variable in class gov.lanl.Web.User
cat - Static variable in class gov.lanl.Web.UserMgr
cat - Static variable in class gov.lanl.Web.XQLQuery
cat - Static variable in class gov.lanl.Web.ZipCodes
categories - Variable in class gov.lanl.Web.SummaryChartDaemon
cdata - Variable in class gov.lanl.Web.LoadCoas
chart - Variable in class gov.lanl.Web.JClassChart
chart - Variable in class gov.lanl.Web.JClassHistoryChart
chart - Variable in class gov.lanl.Web.JClassReport
chart - Variable in class gov.lanl.Web.JFreeChartGenericChart
chart - Variable in class gov.lanl.Web.JFreeChartHistoryChart
chart - Variable in class gov.lanl.Web.JFreeChartReport
chart - Variable in class gov.lanl.Web.KCHistoryChart
chart - Variable in class gov.lanl.Web.KCReport
chartProps - Variable in class gov.lanl.Web.JClassChart
chartProps - Variable in class gov.lanl.Web.JFreeChartGenericChart
check(Content, User) - Method in class gov.lanl.Web.Alert: Check the content for matching alerts
checkPassword(String) - Method in class gov.lanl.Web.User: Validate the password
clearErrors() - Method in class gov.lanl.Web.DOMErrors
coas - Variable in class gov.lanl.Web.CountsDaemon
coas - Variable in class gov.lanl.Web.JClassReport
coas - Variable in class gov.lanl.Web.JFreeChartReport
coas - Variable in class gov.lanl.Web.KCReport
coas - Variable in class gov.lanl.Web.LoadCoas
coas - Variable in class gov.lanl.Web.SummaryChartDaemon: Mapping of system names to the filenames containing the current graph
coas - Variable in class gov.lanl.Web.SyndromeReport
code - Variable in class gov.lanl.Web.Content: Code for ObservationData
code - Variable in class gov.lanl.Web.Laboratory
code - Variable in class gov.lanl.Web.SyndromeReportFieldsHelper.FieldInformation
codes - Static variable in class gov.lanl.Web.SyndromeReportFieldsHelper
colorMapConfigFileURL - Variable in class gov.lanl.Web.ArcIMSMapBuilder: a URL to the color map configuration file
colorMapHashtable - Variable in class gov.lanl.Web.ArcIMSMapBuilder: a multi-level colormap hashtable that uses event type (e.g., "Influenza Like Illness") as key and an TreeMap object as value; the TreeMap object uses the value range (e.g., "1-4") as key and the corresponding color value (e.g., "yellow") as value
cols - Variable in class gov.lanl.Web.CSVTable: Hashtable holds vectors attached to each column
columns - Variable in class gov.lanl.Web.CSVTable: Labels are in the first row, hold them in columns
combine() - Method in class gov.lanl.Web.Trait: private class for combining a composite, atomic Trait such as HL7
compare(Object, Object) - Method in class gov.lanl.Web.Immunize.Compare
compare(Object, Object) - Method in class gov.lanl.Web.Laboratory.Compare
compare(Object, Object) - Method in class gov.lanl.Web.SyndromeReport.CalendarComparator
compare(Object, Object) - Method in class gov.lanl.Web.SyndromeReport.Compare
compare(Object, Object) - Method in class gov.lanl.Web.SyndromeReportFieldsHelper.FieldInformationComparator
compare(Trait) - Method in class gov.lanl.Web.Trait: compare traits to see if their contents are identical
compareTo(Object) - Method in class gov.lanl.Web.PagesStats
compareTo(Object) - Method in class gov.lanl.Web.User: Compare to operation to see if the input user is the same as this user.
composite - Variable in class gov.lanl.Web.Content: composite ObservationData
configFile - Static variable in class gov.lanl.Web.Login
configFile - Static variable in class gov.lanl.Web.UserMgr
configFile - Static variable in class gov.lanl.Web.ZipCodes
configProperty - Static variable in class gov.lanl.Web.DataMapping: Property sheet defining vaccine type mapping
contains(Trait) - Method in class gov.lanl.Web.Trait: Check if target Trait is contained in this trait
copyTrait(Trait) - Method in class gov.lanl.Web.Trait
corrMgr - Variable in class gov.lanl.Web.HL72CORBA
corrMgr - Variable in class gov.lanl.Web.Pids
count - Variable in class gov.lanl.Web.SyndromeCount
country - Static variable in class gov.lanl.Web.Login
country - Variable in class gov.lanl.Web.User
country - Variable in class gov.lanl.Web.UserMgr
counts - Variable in class gov.lanl.Web.CountsDaemon
counts - Variable in class gov.lanl.Web.GraphGenerator.DataPoint
counts - Variable in class gov.lanl.Web.ObservationDataSource
counts - Variable in class gov.lanl.Web.PagesStats
createInstance(int) - Static method in class gov.lanl.Web.CountsDaemon
createInstance(int) - Static method in class gov.lanl.Web.SummaryChartDaemon
createString() - Method in class gov.lanl.Web.CSVTable: print out String representation of data
createSystemColorHashtable() - Method in class gov.lanl.Web.ArcIMSMapBuilder: createSystemColorHashtable() create a lookup hashtable for system colors.
csv - Variable in class gov.lanl.Web.CSV2DOM
csv2CORBA - Variable in class gov.lanl.Web.CollectData
csvRead(String, HashMap) - Method in class gov.lanl.Web.CSV2CORBA: Read in the CSV file to a DOM Document
csvRead(String[], HashMap) - Method in class gov.lanl.Web.CSV2CORBA: Read in CSV data from String arrays
csvTable - Variable in class gov.lanl.Web.JClassHistoryChart: internal table generated from csv file above
csvTable - Variable in class gov.lanl.Web.JFreeChartHistoryChart: internal table generated from csv file above
csvTable - Variable in class gov.lanl.Web.KCHistoryChart: internal table generated from csv file above
currentId - Variable in class gov.lanl.Web.Pids

D

DATE_RECORDED - Static variable in class gov.lanl.Web.SyndromeReport
DATE_TIME - Static variable in class gov.lanl.Web.CountsDaemon
DATE_TIME - Static variable in class gov.lanl.Web.Immunize
DATE_TIME - Static variable in class gov.lanl.Web.JClassChart
DATE_TIME - Static variable in class gov.lanl.Web.JClassReport
DATE_TIME - Static variable in class gov.lanl.Web.JFreeChartReport
DATE_TIME - Static variable in class gov.lanl.Web.KCReport
DATE_TIME - Static variable in class gov.lanl.Web.Laboratory
DATE_TIME - Static variable in class gov.lanl.Web.ObservationDataSource
DATE_TIME - Static variable in class gov.lanl.Web.SyndromeReport
DAY_MILLIS - Static variable in class gov.lanl.Web.CountsDaemon
DAY_MILLIS - Static variable in class gov.lanl.Web.SummaryChartDaemon
DEBUG - Variable in class gov.lanl.Web.ArcIMSMapBuilder: debug flag
DOMErrors - class gov.lanl.Web.DOMErrors.
DOMErrors() - Constructor for class gov.lanl.Web.DOMErrors
DataMapping - class gov.lanl.Web.DataMapping.: Provide a mapping from the vaccine CVX type code to a displayable name.
DataMapping() - Constructor for class gov.lanl.Web.DataMapping: Constructor
DataMapping(String) - Constructor for class gov.lanl.Web.DataMapping: Constructor that also specifieds what bundle to read in
Default - Static variable in class gov.lanl.Web.CSVTable: Default Code value
DownloadImageServlet - class gov.lanl.Web.DownloadImageServlet.: Simple servlet that dumps image data to the client from session data.
DownloadImageServlet() - Constructor for class gov.lanl.Web.DownloadImageServlet
DownloadSummaryImageServlet - class gov.lanl.Web.DownloadSummaryImageServlet.: Simple servlet that dumps image data to the client from the summary chart daemon.
DownloadSummaryImageServlet() - Constructor for class gov.lanl.Web.DownloadSummaryImageServlet
dataSource - Variable in class gov.lanl.Web.GraphGenerator
dataType - Static variable in class gov.lanl.Web.Laboratory
date - Variable in class gov.lanl.Web.CSV2CORBA
date - Variable in class gov.lanl.Web.GraphGenerator.DataPoint
date - Variable in class gov.lanl.Web.PagesStats
dateFormat - Static variable in class gov.lanl.Web.Immunize
dateFormat - Variable in class gov.lanl.Web.JClassChart
dateFormat - Variable in class gov.lanl.Web.JFreeChartGenericChart
dateFormat - Static variable in class gov.lanl.Web.Laboratory
dateFormat - Static variable in class gov.lanl.Web.PIDSHandler: Format of date to use in reading in the timestamp
dateFormat - Variable in class gov.lanl.Web.SyndromeReport
daysReturned - Variable in class gov.lanl.Web.GraphDataSource
daysReturned - Variable in class gov.lanl.Web.UCLDataSource
debug - Static variable in class gov.lanl.Web.CSV2CORBA
debug - Static variable in class gov.lanl.Web.HL72CORBA
delContent(String) - Method in class gov.lanl.Web.Content: Remove an element by name
delUser(String) - Method in class gov.lanl.Web.UserMgr: delete User based on the unique UserId
description - Variable in class gov.lanl.Web.SyndromeReportFieldsHelper.FieldInformation
directory - Variable in class gov.lanl.Web.LoadCoas
displayLabels - Variable in class gov.lanl.Web.PidsFields
displayTraits - Variable in class gov.lanl.Web.PidsFields
displayTypes - Variable in class gov.lanl.Web.PidsFields
doConnect() - Method in class gov.lanl.Web.COAS: Connect to the defined COAS server
doConnect() - Method in class gov.lanl.Web.Pids: Connect to the defined PIDS server
doGet(HttpServletRequest, HttpServletResponse) - Method in class gov.lanl.Web.DownloadImageServlet
doGet(HttpServletRequest, HttpServletResponse) - Method in class gov.lanl.Web.DownloadSummaryImageServlet
doc - Variable in class gov.lanl.Web.CSV2CORBA: XML document being processed
doc - Variable in class gov.lanl.Web.LoadCoas
doc - Variable in class gov.lanl.Web.XQLQuery
docBuilder - Static variable in class gov.lanl.Web.CSV2DOM
docBuilder - Static variable in class gov.lanl.Web.CSVTable
docBuilder - Static variable in class gov.lanl.Web.Content
docBuilder - Static variable in class gov.lanl.Web.TabletoDOM
docBuilderFactory - Static variable in class gov.lanl.Web.CSV2DOM
docBuilderFactory - Static variable in class gov.lanl.Web.CSVTable: XML Document handling classes
docBuilderFactory - Static variable in class gov.lanl.Web.Content
docBuilderFactory - Static variable in class gov.lanl.Web.TabletoDOM
document - Static variable in class gov.lanl.Web.CSVTable
document - Static variable in class gov.lanl.Web.Content
domErrors - Static variable in class gov.lanl.Web.CSVTable
domErrors - Static variable in class gov.lanl.Web.Content
domObsData - Variable in class gov.lanl.Web.LoadCoas
domainStr - Variable in class gov.lanl.Web.QualifiedPersonId_
draw(String) - Method in class gov.lanl.Web.JClassHistoryChart: return graph name and trigger drawing
draw(String) - Method in class gov.lanl.Web.JFreeChartHistoryChart: return graph name and trigger drawing

E

email - Variable in class gov.lanl.Web.Login
encodePassword(String) - Method in class gov.lanl.Web.User: encode the password
encrypt - Static variable in class gov.lanl.Web.User
endDate - Variable in class gov.lanl.Web.GraphGenerator
endDate - Variable in class gov.lanl.Web.ObservationDataSource
endDate - Variable in class gov.lanl.Web.PagesDataSource
envelope - Variable in class gov.lanl.Web.ArcIMSMapBuilder
equals(Object) - Method in class gov.lanl.Web.Immunize.Compare
equals(Object) - Method in class gov.lanl.Web.Laboratory.Compare
equals(Object) - Method in class gov.lanl.Web.SyndromeReport.Compare
equals(Object) - Method in class gov.lanl.Web.User: Equality check for user to see if he is already known.
error(SAXParseException) - Method in class gov.lanl.Web.DOMErrors
errors - Variable in class gov.lanl.Web.DOMErrors
expandCountsMap(TreeMap) - Static method in class gov.lanl.Web.SyndromeReport: Fill in the missing slots in a Calendar-to-Integer mapping with zeros.
expandStartDate(Calendar, int) - Static method in class gov.lanl.Web.JFreeChartGenericChart: Adjust the given start date back to allow for collecting enough data to graph running totals or averages
export() - Method in class gov.lanl.Web.UserMgr: get all the users in in the persistent hashtable
extractCategory(String) - Static method in class gov.lanl.Web.SummaryChartDaemon: Extract the category (RESPIRATORY, GI, etc) from the code.
extractSystem(String) - Static method in class gov.lanl.Web.CountsDaemon: Extract the system name from a code.
extractSystem(String) - Static method in class gov.lanl.Web.SummaryChartDaemon: Extract the system (WALDO, C-DEF, etc.)

F

FileHandler - class gov.lanl.Web.FileHandler.: Read file in and write out as needed
FileHandler() - Constructor for class gov.lanl.Web.FileHandler: Default constructor
FileHandler(String) - Constructor for class gov.lanl.Web.FileHandler: Constructor
fatalError(SAXParseException) - Method in class gov.lanl.Web.DOMErrors
fieldHeaders - Variable in class gov.lanl.Web.CSV2DOM
fieldHeaders - Variable in class gov.lanl.Web.TabletoDOM
fields - Variable in class gov.lanl.Web.Laboratory
fields - Variable in class gov.lanl.Web.SyndromeReport
fields - Static variable in class gov.lanl.Web.SyndromeReportFieldsHelper
file - Variable in class gov.lanl.Web.FileHandler
filename - Variable in class gov.lanl.Web.JClassHistoryChart: data file to be plotted
filename - Variable in class gov.lanl.Web.JFreeChartHistoryChart: data file to be plotted
filename - Variable in class gov.lanl.Web.KCHistoryChart: data file to be plotted
filters - Static variable in class gov.lanl.Web.ContentHandler
filters - Static variable in class gov.lanl.Web.PIDSHandler: Vector of filters of keys to be removed from processing
finalize() - Method in class gov.lanl.Web.COAS: Method declaration
finalize() - Method in class gov.lanl.Web.Pids: release resources on the orb when terminating
findAndUpdate(TaggedProfile[]) - Method in class gov.lanl.Web.Pids: find the profiles and update each or store them.
findNodes(String) - Method in class gov.lanl.Web.XQLQuery: Return set of nodes matching query
find_candidates(Trait[], String[], float) - Method in class gov.lanl.Web.Pids: Find candidate persons with matching traits
find_candidates(String[], float) - Method in class gov.lanl.Web.Pids: Request a list of traits for each id which matches the trait list set up by the web page.
first - Variable in class gov.lanl.Web.CSVTable: Flag for reading CSV table indicating that the first line has the variable names
first - Variable in class gov.lanl.Web.JClassHistoryChart
first - Variable in class gov.lanl.Web.JFreeChartHistoryChart
fitsGenerator - Variable in class gov.lanl.Web.BaselineDataSource
fitsGenerator - Variable in class gov.lanl.Web.UCLDataSource
formItems - Variable in class gov.lanl.Web.PIDSHandler: Values of HL7 data type
formItems - Variable in class gov.lanl.Web.PidsFields
formLabels - Variable in class gov.lanl.Web.PidsFields
formNames - Variable in class gov.lanl.Web.PIDSHandler: Display Names for form
formNames - Variable in class gov.lanl.Web.PidsFields
formTraits - Variable in class gov.lanl.Web.PIDSHandler: Values of form traits (HL7 names)
formTraits - Variable in class gov.lanl.Web.PidsFields
formTypes - Variable in class gov.lanl.Web.PIDSHandler: Data types for Forms
formTypes - Variable in class gov.lanl.Web.PidsFields
formWidth - Variable in class gov.lanl.Web.PidsFields
formatXMLTag(String) - Static method in class gov.lanl.Web.CSV2DOM: Remove XML-illegal characters from a string.

G

GraphDataSource - class gov.lanl.Web.GraphDataSource.: Describes a source that generates counts by date
GraphDataSource() - Constructor for class gov.lanl.Web.GraphDataSource
GraphGenerator - class gov.lanl.Web.GraphGenerator.: Describes a strategy for graphing data, such as daily counts, average daily counts over previous week, etc.
GraphGenerator(Calendar, Calendar, GraphDataSource, int, int) - Constructor for class gov.lanl.Web.GraphGenerator
GraphGenerator.DataPoint - class gov.lanl.Web.GraphGenerator.DataPoint.
GraphGenerator.DataPoint(Calendar, double) - Constructor for class gov.lanl.Web.GraphGenerator.DataPoint
generateMap(String, TreeMap) - Method in class gov.lanl.Web.ArcIMSMapBuilder: setAppServerLink() is used to reconfigure the link to the ARCIMS Application Server.
generateMap(String) - Method in class gov.lanl.Web.JClassReport: Create map from queried data with zip codes colored.
generateMap(String) - Method in class gov.lanl.Web.JFreeChartReport: Create map from queried data with zip codes colored.
generateReport(String) - Method in class gov.lanl.Web.JClassReport: Generate the graph
generateReport(String) - Method in class gov.lanl.Web.JFreeChartReport: Generate the graph
generateReport(String, String) - Method in class gov.lanl.Web.KCReport: Generate the graphs for from the page and syndromeName
getAllIdentities() - Method in class gov.lanl.Web.Pids: return all the identities in all states with all the traits
getAllRecords() - Method in class gov.lanl.Web.SyndromeReport: return XMl string of all contained records
getCategories() - Method in class gov.lanl.Web.SummaryChartDaemon: Get a list of categories graphs are available for.
getChart(ObservationDataStruct[], String, String, String) - Method in class gov.lanl.Web.JClassChart: Compute the time history chart
getChart(ObservationDataStruct[], String, String, String) - Method in class gov.lanl.Web.JFreeChartGenericChart: Deprecated.
getChart(GraphDataSource[], String, String) - Method in class gov.lanl.Web.JFreeChartGenericChart: Deprecated.
getChart(GraphDataSource[], String, String, int) - Method in class gov.lanl.Web.JFreeChartGenericChart: Deprecated.
getChart(GraphDataSource[], Calendar, Calendar, int, int, int, int) - Static method in class gov.lanl.Web.JFreeChartGenericChart: Compute the time history chart
getChart() - Method in class gov.lanl.Web.KCHistoryChart: return Chart
getChart(ObservationDataStruct[], String, String, String) - Method in class gov.lanl.Web.SyndromeReportChart: Compute the time history chart
getCode() - Method in class gov.lanl.Web.Content
getCode() - Method in class gov.lanl.Web.SyndromeReportFieldsHelper.FieldInformation
getCodes() - Static method in class gov.lanl.Web.SyndromeReportFieldsHelper: Get a list of the codes (high level categories) of fields available, such as "B-Safer"
getCombinedTitle(GraphDataSource[]) - Static method in class gov.lanl.Web.JFreeChartGenericChart: Get a title for the given combination of graph data generators.
getContent(String) - Method in class gov.lanl.Web.Content: Look up code in composite or qualifier
getContent() - Method in class gov.lanl.Web.Content: return composite vector
getCount() - Method in class gov.lanl.Web.SyndromeCount: return count TreeMap
getCountry() - Method in class gov.lanl.Web.Login: get the country field
getCountry() - Method in class gov.lanl.Web.User: get the country (c) parameter
getCounts(Calendar) - Method in class gov.lanl.Web.BaselineDataSource: Get the value of the generator for the given date.
getCounts(Calendar, String, String) - Method in class gov.lanl.Web.CountsDaemon: Get the number of counts for the given day.
getCounts(Calendar) - Method in class gov.lanl.Web.GraphDataSource: Get the value of the generator for the given date.
getCounts(Calendar, int) - Method in class gov.lanl.Web.GraphDataSource: Get the value of the generator for the given interval.
getCounts() - Method in class gov.lanl.Web.GraphGenerator.DataPoint
getCounts() - Method in class gov.lanl.Web.ObservationDataSource
getCounts(Calendar) - Method in class gov.lanl.Web.ObservationDataSource: Get the value of the generator for the given date.
getCounts(Calendar) - Method in class gov.lanl.Web.PagesDataSource: Get the value of the generator for the given date.
getCounts() - Method in class gov.lanl.Web.PagesStats
getCounts(Calendar) - Method in class gov.lanl.Web.UCLDataSource: Get the value of the generator for the given date.
getCounts(Calendar, int) - Method in class gov.lanl.Web.UCLDataSource: Get the value of the generator for the given interval.
getCredentials() - Method in class gov.lanl.Web.COAS: get the credentials associated with the underlying connection
getCredentials() - Method in class gov.lanl.Web.User: Return a Properties sheet with identification
getDN() - Method in class gov.lanl.Web.Login: get the Distinguished Name of the user
getDN() - Method in class gov.lanl.Web.User: get the Distinguished Name of the Person
getDailyCounts(ArrayList, Calendar) - Method in class gov.lanl.Web.CountsDaemon: Examine a list of observations and determine the number of which had a start date matching the given date.
getDataCounts(Calendar) - Method in class gov.lanl.Web.PagesDataSource: Get the number of counts on the given date that generated the page score returned by getCounts(Calendar)
getDataPoint(Calendar) - Method in class gov.lanl.Web.GraphGenerator
getDataPoints() - Method in class gov.lanl.Web.GraphGenerator
getDataSource() - Method in class gov.lanl.Web.GraphGenerator: Get the data source.
getDate() - Method in class gov.lanl.Web.GraphGenerator.DataPoint
getDate() - Method in class gov.lanl.Web.PagesStats
getDateString() - Method in class gov.lanl.Web.PagesStats
getDaysReturned() - Method in class gov.lanl.Web.GraphDataSource: Get the number of days of data returned by the last getCounts(Calendar, int) call.
getDaysReturned() - Method in class gov.lanl.Web.UCLDataSource: Get the number of days of data returned by the last getCounts(Calendar, int) call.
getDescription() - Method in class gov.lanl.Web.SyndromeReportFieldsHelper.FieldInformation
getDisplayLabels() - Method in class gov.lanl.Web.PidsFields: get the Display labels
getDisplayTraits() - Method in class gov.lanl.Web.PidsFields: get the profile requested from the PIDS server which matches the input variables
getDisplayTypes() - Method in class gov.lanl.Web.PidsFields: get the data types of traits returned
getDocument() - Method in class gov.lanl.Web.CSV2CORBA: get the XML Document being processed
getDocument() - Static method in class gov.lanl.Web.Content: return static document value
getDom(int) - Method in class gov.lanl.Web.SyndromeReport: return Dom representation of specified record
getEmail() - Method in class gov.lanl.Web.Login: get the current email address
getEndDate() - Method in class gov.lanl.Web.BaselineDataSource: Get the end date of this generator's date range.
getEndDate() - Method in class gov.lanl.Web.GraphDataSource: Get the end date of this generator's date range.
getEndDate() - Method in class gov.lanl.Web.GraphGenerator: Get the last date to be graphed.
getEndDate() - Method in class gov.lanl.Web.ObservationDataSource: Get the end date of this generator's date range.
getEndDate() - Method in class gov.lanl.Web.PagesDataSource: Get the end date of this generator's date range.
getEndDate() - Method in class gov.lanl.Web.UCLDataSource: Get the end date of this generator's date range.
getErrors() - Method in class gov.lanl.Web.DOMErrors
getExtendedEndDate() - Method in class gov.lanl.Web.GraphGenerator: Get the last date whose data can affect the graph.
getExtendedStartDate() - Method in class gov.lanl.Web.GraphGenerator: Get the first date whose data can affect the graph.
getFieldHeaders() - Method in class gov.lanl.Web.CSV2DOM: Get a list of the field headers (from the first line in the file) as Strings
getFields() - Method in class gov.lanl.Web.Laboratory: return the field labels
getFields() - Method in class gov.lanl.Web.SyndromeReport: return the fields labels
getFields() - Static method in class gov.lanl.Web.SyndromeReportFieldsHelper: Get a list of all fields supported in all codes.
getFile() - Method in class gov.lanl.Web.FileHandler: read in file and return a string representation
getFitsGenerator() - Method in class gov.lanl.Web.BaselineDataSource
getFitsGenerator() - Method in class gov.lanl.Web.UCLDataSource
getFormItems() - Method in class gov.lanl.Web.PidsFields: get the Trait names
getFormLabels() - Method in class gov.lanl.Web.PidsFields: get Names of Labels in forms
getFormNames() - Method in class gov.lanl.Web.PidsFields: get names of the Form variables
getFormTraits() - Method in class gov.lanl.Web.PidsFields: get the underlying Traits of Forms
getFormTypes() - Method in class gov.lanl.Web.PidsFields: get the data types of the Forms for potential processing by javascript
getFormWidth() - Method in class gov.lanl.Web.PidsFields: get the column width of each form variable
getGraphData(String) - Method in class gov.lanl.Web.SummaryChartDaemon: Get the summary chart image data for the given system.
getGraphFilename(String) - Method in class gov.lanl.Web.SummaryChartDaemon: Deprecated.
getId() - Method in class gov.lanl.Web.Laboratory: Return the prefix for the id to be queried
getId() - Method in class gov.lanl.Web.Pids: get current placeholder id, if present
getImmunizationRecords(COAS, Trait[]) - Method in class gov.lanl.Web.Immunize: Obtain the immunization records for all of the external ids and order them by vaccine group and date.
getIncrement(Calendar) - Method in class gov.lanl.Web.GraphGenerator: Get the increment to advance by after the given date.
getIncrement() - Method in class gov.lanl.Web.JFreeChartGenericChart: Deprecated.
getIncrement(int) - Static method in class gov.lanl.Web.JFreeChartGenericChart: Get the plot increment (number of days of advance between plot points) appropriate to the given range code (from constants CHART_DAY, CHART_MONTH_AVERAGE, etc.
getIndex() - Method in class gov.lanl.Web.CSV2DOM.CharacterIterator: Get the index into the string to be returned next.
getInstance() - Static method in class gov.lanl.Web.CountsDaemon
getInstance() - Static method in class gov.lanl.Web.PIDSHandler: get PIDSHandler static reference
getInstance() - Static method in class gov.lanl.Web.SummaryChartDaemon
getInterval(Calendar) - Method in class gov.lanl.Web.GraphGenerator: Get the interval to collect data from.
getInterval() - Method in class gov.lanl.Web.JFreeChartGenericChart: Deprecated.
getInterval(int) - Static method in class gov.lanl.Web.JFreeChartGenericChart: Get the plot interval (range of days gathered per data point), appropriate to the given range code (from constants CHART_DAY, CHART_MONTH_AVERAGE, etc.
getInterval() - Method in class gov.lanl.Web.SyndromeReport: Deprecated.
getIpAddr() - Method in class gov.lanl.Web.User: get the IpAddr of this user
getLabels() - Method in class gov.lanl.Web.CSVTable: get Labels
getLineColor() - Method in class gov.lanl.Web.BaselineDataSource
getLineColor() - Method in class gov.lanl.Web.GraphDataSource: Get the line color for the data.
getLineColor() - Method in class gov.lanl.Web.UCLDataSource
getLineNo() - Method in class gov.lanl.Web.CSVTable: get the current lnineNo red
getLineNumber() - Method in class gov.lanl.Web.CSV2DOM: Get the line number next to be processed, starting from index 0.
getLineStyle() - Method in class gov.lanl.Web.BaselineDataSource: Get the line style for the data.
getLineStyle() - Method in class gov.lanl.Web.GraphDataSource: Get the line style for the data.
getLineStyle() - Method in class gov.lanl.Web.ObservationDataSource: Get the line style for the data.
getLineStyle() - Method in class gov.lanl.Web.PagesDataSource: Get the line style for the data.
getMail() - Static method in class gov.lanl.Web.Login: return known email addresses
getMailbyOrg(String) - Method in class gov.lanl.Web.UserMgr: get the email addresses of all users in an organization
getName() - Method in class gov.lanl.Web.BaselineDataSource: Get the name of the generator.
getName() - Method in class gov.lanl.Web.GraphDataSource: Get the name of the generator.
getName() - Method in class gov.lanl.Web.ObservationDataSource: Get the name of the generator.
getName() - Method in class gov.lanl.Web.PagesDataSource: Get the name of the generator.
getName() - Method in class gov.lanl.Web.Trait: get the Name of the Trait
getName() - Method in class gov.lanl.Web.UCLDataSource: Get the name of the generator.
getNames() - Static method in class gov.lanl.Web.Login: obtain list of valid users
getNamesbyOrg(String) - Method in class gov.lanl.Web.UserMgr: Get all the userNames for a given organization
getNextDate(Calendar) - Method in class gov.lanl.Web.GraphGenerator
getNode(String, String) - Method in class gov.lanl.Web.CSVTable: Return node Element
getNode() - Method in class gov.lanl.Web.Content: return DOM Node for current Content object and children
getNumber() - Method in class gov.lanl.Web.SyndromeReport: return the number of observations that were found
getObsById(int) - Method in class gov.lanl.Web.SyndromeReport: get the ObservationId associated with a data element
getObservation(ObservationId) - Method in class gov.lanl.Web.COAS: get the observation based on the Id
getObservationValue(Any) - Method in class gov.lanl.Web.Content: Extract the ObservationValue and convert it
getObservations() - Method in class gov.lanl.Web.ObservationDataSource
getObservations(String, String, String, String, boolean) - Method in class gov.lanl.Web.SyndromeReport: Deprecated.
getObservations(String[], String, String, String, boolean) - Method in class gov.lanl.Web.SyndromeReport: Deprecated.
getObservations(String, String, Calendar, Calendar, boolean) - Method in class gov.lanl.Web.SyndromeReport: get the observations from the server
getObservations(String[], String, Calendar, Calendar, boolean) - Method in class gov.lanl.Web.SyndromeReport: Get observations from the server, merging results from multiple facilities.
getOrb() - Static method in class gov.lanl.Web.COAS: return the Orb
getOrb() - Static method in class gov.lanl.Web.Pids: return the Orb
getOrg() - Method in class gov.lanl.Web.User: get the Organization of the user from the Distinguished Name dn
getPageStatisticsByDay(String, Calendar, Calendar) - Method in class gov.lanl.Web.SyndromeReport: Get an ordered set of page statistics for the current observations (which are obtained from CountsDaemon)
getPagesChart(Collection, String, String) - Method in class gov.lanl.Web.SyndromeReport: Deprecated.
getPagesChartData(Collection, Calendar, Calendar) - Method in class gov.lanl.Web.SyndromeReport: Set up to graph a chart of Page's Statistics
getPassword() - Method in class gov.lanl.Web.User: get the encrypted Password
getPlot() - Method in class gov.lanl.Web.JClassHistoryChart: get the plot file name without the suffix "Plot.png"
getPlot() - Method in class gov.lanl.Web.JFreeChartHistoryChart: get the plot file name without the suffix "Plot.png"
getPlot() - Method in class gov.lanl.Web.