Overview  Package   Class  Use  Deprecated  Index
Home >> All >> joelib >> [ algo overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

---

joelib.algo
Class DFS  

java.lang.Object
  joelib.algo.DFS

All Implemented Interfaces:

joelib.desc.Descriptor, joelib.util.PropertyAcceptor

---

public class DFS

extends java.lang.Object

implements joelib.desc.Descriptor

Depth First Search.

---

Field Summary
private static joelib.util.JOEProperty[]	ACCEPTED_PROPERTIES
private static int	BLACK
private  int[]	color
static java.lang.String	DESC_KEY
private  joelib.desc.DescriptorInfo	descInfo
private  int[]	discovered
private  int[]	finished
private static int	GRAY
private static org.apache.log4j.Category	logger           Obtain a suitable logger.
private  int[]	parent
private  joelib.molecule.JOEAtom	startAtom
static java.lang.String	STARTING_ATOM
private  int	traverseTime
private static int	WHITE

 

Constructor Summary

DFS()           Constructor for the KierShape1 object

 

Method Summary
joelib.util.JOEProperty[]	acceptedProperties()
joelib.desc.DescResult	calculate(joelib.molecule.JOEMol mol)           Description of the Method
joelib.desc.DescResult	calculate(joelib.molecule.JOEMol mol, joelib.desc.DescResult descResult)           Description of the Method
joelib.desc.DescResult	calculate(joelib.molecule.JOEMol mol, joelib.desc.DescResult descResult, java.util.Map properties)           Description of the Method
joelib.desc.DescResult	calculate(joelib.molecule.JOEMol mol, java.util.Map properties)           Description of the Method
void	clear()           Description of the Method
joelib.desc.DescriptorInfo	getDescInfo()           Description of the Method
joelib.desc.DescDescription	getDescription()           Gets the description attribute of the Descriptor object
boolean	initialize(java.util.Map properties)           Description of the Method
boolean	testDescriptor()           Test the implementation of this descriptor.
private  void	visit(joelib.molecule.JOEAtom atom)           Description of the Method

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

logger

private static org.apache.log4j.Category logger

Obtain a suitable logger.

---

DESC_KEY

public static final java.lang.String DESC_KEY

See Also:

Constant Field Values

---

STARTING_ATOM

public static final java.lang.String STARTING_ATOM

See Also:

Constant Field Values

---

ACCEPTED_PROPERTIES

private static final joelib.util.JOEProperty[] ACCEPTED_PROPERTIES

---

WHITE

private static final int WHITE

See Also:

Constant Field Values

---

GRAY

private static final int GRAY

See Also:

Constant Field Values

---

BLACK

private static final int BLACK

See Also:

Constant Field Values

---

descInfo

private joelib.desc.DescriptorInfo descInfo

---

startAtom

private joelib.molecule.JOEAtom startAtom

---

color

private int[] color

---

discovered

private int[] discovered

---

finished

private int[] finished

---

parent

private int[] parent

---

traverseTime

private int traverseTime

Constructor Detail

DFS

public DFS()

Constructor for the KierShape1 object

Method Detail

getDescInfo

public joelib.desc.DescriptorInfo getDescInfo()

Description of the Method

Specified by:

getDescInfo in interface joelib.desc.Descriptor

---

getDescription

public joelib.desc.DescDescription getDescription()

Gets the description attribute of the Descriptor object

Specified by:

getDescription in interface joelib.desc.Descriptor

---

acceptedProperties

public joelib.util.JOEProperty[] acceptedProperties()

Specified by:

acceptedProperties in interface joelib.util.PropertyAcceptor

---

calculate

public joelib.desc.DescResult calculate(joelib.molecule.JOEMol mol)
                                 throws joelib.desc.DescriptorException

Description of the Method

Specified by:

calculate in interface joelib.desc.Descriptor

---

calculate

public joelib.desc.DescResult calculate(joelib.molecule.JOEMol mol,
                                        java.util.Map properties)
                                 throws joelib.desc.DescriptorException

Description of the Method

Specified by:

calculate in interface joelib.desc.Descriptor

---

calculate

public joelib.desc.DescResult calculate(joelib.molecule.JOEMol mol,
                                        joelib.desc.DescResult descResult)
                                 throws joelib.desc.DescriptorException

Description of the Method

Specified by:

calculate in interface joelib.desc.Descriptor

---

calculate

public joelib.desc.DescResult calculate(joelib.molecule.JOEMol mol,
                                        joelib.desc.DescResult descResult,
                                        java.util.Map properties)
                                 throws joelib.desc.DescriptorException

Description of the Method

Specified by:

calculate in interface joelib.desc.Descriptor

---

clear

public void clear()

Description of the Method

Specified by:

clear in interface joelib.desc.Descriptor

---

initialize

public boolean initialize(java.util.Map properties)

Description of the Method

Specified by:

initialize in interface joelib.desc.Descriptor

---

testDescriptor

public boolean testDescriptor()

Test the implementation of this descriptor.

Specified by:

testDescriptor in interface joelib.desc.Descriptor

---

visit

private void visit(joelib.molecule.JOEAtom atom)

Description of the Method

---

Overview  Package   Class  Use  Deprecated  Index
Home >> All >> joelib >> [ algo overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

---