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A
- ACCEPTED_PROPERTIES - Static variable in class joelib.algo.BFS
- ACCEPTED_PROPERTIES - Static variable in class joelib.algo.DFS
- acceptedProperties() - Method in class joelib.algo.BFS
- acceptedProperties() - Method in class joelib.algo.DFS
B
- BFS - class joelib.algo.BFS.
- Breadh First Search.
- BFS() - Constructor for class joelib.algo.BFS
- Constructor for the KierShape1 object
- BFSResult - class joelib.algo.BFSResult.
- Result of a BFS.
- BFSResult() - Constructor for class joelib.algo.BFSResult
- Constructor for the BFSResult object
- BLACK - Static variable in class joelib.algo.BFS
- BLACK - Static variable in class joelib.algo.DFS
- basicFormat - Static variable in class joelib.algo.BFSResult
- basicFormat - Static variable in class joelib.algo.DFSResult
C
- calculate(JOEMol) - Method in class joelib.algo.BFS
- Description of the Method
- calculate(JOEMol, Map) - Method in class joelib.algo.BFS
- Description of the Method
- calculate(JOEMol, DescResult) - Method in class joelib.algo.BFS
- Description of the Method
- calculate(JOEMol, DescResult, Map) - Method in class joelib.algo.BFS
- Description of the Method
- calculate(JOEMol) - Method in class joelib.algo.DFS
- Description of the Method
- calculate(JOEMol, Map) - Method in class joelib.algo.DFS
- Description of the Method
- calculate(JOEMol, DescResult) - Method in class joelib.algo.DFS
- Description of the Method
- calculate(JOEMol, DescResult, Map) - Method in class joelib.algo.DFS
- Description of the Method
- clear() - Method in class joelib.algo.BFS
- Description of the Method
- clear() - Method in class joelib.algo.DFS
- Description of the Method
- clone(BFSResult) - Method in class joelib.algo.BFSResult
- clone() - Method in class joelib.algo.BFSResult
- clone(DFSResult) - Method in class joelib.algo.DFSResult
- clone() - Method in class joelib.algo.DFSResult
- color - Variable in class joelib.algo.DFS
D
- DESC_KEY - Static variable in class joelib.algo.BFS
- DESC_KEY - Static variable in class joelib.algo.DFS
- DFS - class joelib.algo.DFS.
- Depth First Search.
- DFS() - Constructor for class joelib.algo.DFS
- Constructor for the KierShape1 object
- DFSResult - class joelib.algo.DFSResult.
- Result of a DFS.
- DFSResult() - Constructor for class joelib.algo.DFSResult
- Constructor for the DFSResult object
- descInfo - Variable in class joelib.algo.BFS
- descInfo - Variable in class joelib.algo.DFS
- discovered - Variable in class joelib.algo.DFS
- discovered - Variable in class joelib.algo.DFSResult
- Description of the Field
F
- finished - Variable in class joelib.algo.DFS
- finished - Variable in class joelib.algo.DFSResult
- Description of the Field
- formatDescription(IOType) - Method in class joelib.algo.BFSResult
- Description of the Method
- formatDescription(IOType) - Method in class joelib.algo.DFSResult
- Description of the Method
- fromPairData(IOType, JOEPairData) - Method in class joelib.algo.BFSResult
- Description of the Method
- fromPairData(IOType, JOEPairData) - Method in class joelib.algo.DFSResult
- Description of the Method
- fromString(IOType, String) - Method in class joelib.algo.BFSResult
- Description of the Method
- fromString(IOType, String) - Method in class joelib.algo.DFSResult
- Description of the Method
G
- GRAY - Static variable in class joelib.algo.BFS
- GRAY - Static variable in class joelib.algo.DFS
- getDescInfo() - Method in class joelib.algo.BFS
- Description of the Method
- getDescInfo() - Method in class joelib.algo.DFS
- Description of the Method
- getDescription() - Method in class joelib.algo.BFS
- Gets the description attribute of the Descriptor object
- getDescription() - Method in class joelib.algo.DFS
- Gets the description attribute of the Descriptor object
I
- init(String) - Method in class joelib.algo.BFSResult
- Constructor for the BFSResult object
- init(String) - Method in class joelib.algo.DFSResult
- Constructor for the DFSResult object
- initialize(Map) - Method in class joelib.algo.BFS
- Description of the Method
- initialize(Map) - Method in class joelib.algo.DFS
- Description of the Method
J
- joelib.algo - package joelib.algo
L
- lineFormat - Static variable in class joelib.algo.BFSResult
- lineFormat - Static variable in class joelib.algo.DFSResult
- logger - Static variable in class joelib.algo.BFS
- Obtain a suitable logger.
- logger - Static variable in class joelib.algo.DFS
- Obtain a suitable logger.
P
- parent - Variable in class joelib.algo.BFSResult
- Description of the Field
- parent - Variable in class joelib.algo.DFS
- parent - Variable in class joelib.algo.DFSResult
- Description of the Field
S
- STARTING_ATOM - Static variable in class joelib.algo.BFS
- STARTING_ATOM - Static variable in class joelib.algo.DFS
- startAtom - Variable in class joelib.algo.BFS
- startAtom - Variable in class joelib.algo.DFS
- startAtomIndex - Variable in class joelib.algo.BFSResult
- Description of the Field
- startAtomIndex - Variable in class joelib.algo.DFSResult
- Description of the Field
T
- testDescriptor() - Method in class joelib.algo.BFS
- Test the implementation of this descriptor.
- testDescriptor() - Method in class joelib.algo.DFS
- Test the implementation of this descriptor.
- toString(IOType) - Method in class joelib.algo.BFSResult
- Description of the Method
- toString(IOType) - Method in class joelib.algo.DFSResult
- Description of the Method
- traverse - Variable in class joelib.algo.BFSResult
- Description of the Field
- traverseTime - Variable in class joelib.algo.DFS
V
- visit(JOEAtom) - Method in class joelib.algo.DFS
- Description of the Method
W
A B C D F G I J L P S T V W
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