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joelib.algo.morgan
Class AtomDoubleParent  

java.lang.Object
  joelib.algo.morgan.AtomDoubleParent

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public class AtomDoubleParent

extends java.lang.Object

Helper class for resolving renumbering ties.

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Field Summary
int	atomIdx           Atom index of the atom.
int	parent           Parent atom index of the atom.
boolean	tie           Renumbering tie flag.
double	tmpAtomIdx           Temporary and new atom index stored as double value to handle huge temporary values.

 

Constructor Summary

AtomDoubleParent()           Constructor for the IntInt object

AtomDoubleParent(int _atomIdx, double _tmpAtomIdx, int _parent, boolean _tie)           Constructor for the IntInt object

 

Method Summary
boolean	equals(java.lang.Object otherObj)           Determine whether this Object is semantically equal to another Object.
java.lang.String	toString()           Convert this Object to a human-readable String.

 

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

 

Field Detail

tie

public boolean tie

Renumbering tie flag.

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tmpAtomIdx

public double tmpAtomIdx

Temporary and new atom index stored as double value to handle huge temporary values. The Morgan algorithm can cause really huge values.

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atomIdx

public int atomIdx

Atom index of the atom.

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parent

public int parent

Parent atom index of the atom.

Constructor Detail

AtomDoubleParent

public AtomDoubleParent()

Constructor for the IntInt object

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AtomDoubleParent

public AtomDoubleParent(int _atomIdx,
                        double _tmpAtomIdx,
                        int _parent,
                        boolean _tie)

Constructor for the IntInt object

Method Detail

equals

public boolean equals(java.lang.Object otherObj)

Description copied from class: java.lang.Object

Determine whether this Object is semantically equal to another Object.

There are some fairly strict requirements on this method which subclasses must follow:

• It must be transitive. If a.equals(b) and b.equals(c), then a.equals(c) must be true as well.
• It must be symmetric. a.equals(b) and b.equals(a) must have the same value.
• It must be reflexive. a.equals(a) must always be true.
• It must be consistent. Whichever value a.equals(b) returns on the first invocation must be the value returned on all later invocations.
• a.equals(null) must be false.
• It must be consistent with hashCode(). That is, a.equals(b) must imply a.hashCode() == b.hashCode(). The reverse is not true; two objects that are not equal may have the same hashcode, but that has the potential to harm hashing performance.

This is typically overridden to throw a java.lang.ClassCastException if the argument is not comparable to the class performing the comparison, but that is not a requirement. It is legal for a.equals(b) to be true even though a.getClass() != b.getClass(). Also, it is typical to never cause a java.lang.NullPointerException.

In general, the Collections API (java.util) use the equals method rather than the == operator to compare objects. However, java.util.IdentityHashMap is an exception to this rule, for its own good reasons.

The default implementation returns this == o.

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toString

public java.lang.String toString()

Description copied from class: java.lang.Object

Convert this Object to a human-readable String. There are no limits placed on how long this String should be or what it should contain. We suggest you make it as intuitive as possible to be able to place it into System.out.println() 55 and such.

It is typical, but not required, to ensure that this method never completes abruptly with a java.lang.RuntimeException.

This method will be called when performing string concatenation with this object. If the result is null, string concatenation will instead use "null".

The default implementation returns getClass().getName() + "@" + Integer.toHexString(hashCode()).

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Overview  Package   Class  Use  Deprecated  Index
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