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joelib.data
Class JOEDataType  

java.lang.Object
  joelib.data.JOEDataType

All Implemented Interfaces:

java.io.Serializable

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public final class JOEDataType

extends java.lang.Object

implements java.io.Serializable

Data type. There exists a lot of default data types which where defined in JOEDataType. These data types are used for caching ring searches and storing special data types like comments or virtual bonds. Furthermore there exist the most important data type JOEPairData for storing descriptor values.

There exists an important difference between JOE_PAIR_DATA 55 and all other data types. Because there are many descriptor values possible for one molecule, they are hashed to enable a fast access to these values. This causes that every descriptor value must have a unique attribute name. It's not possible to store two JOEPairData data elements with the same attribute name (JOEGenericData.setAttribute(String) 55 ).
All other JOEDataType can occur multiple times, even if they have the same attribute name. It's e.g. possible to have multiple comments (JOECommentData) entries for one molecule.

Data type	Data name	Allowed occurence
JOE_UNDEFINED_DATA 55	Undefined	multiple
JOE_VIRTUAL_BOND_DATA 55	VirtualBondData	multiple
JOE_ROTAMER_LIST 55	RotamerList	multiple
JOE_EXTERNAL_BOND_DATA 55	ExternalBondData	multiple
JOE_COMPRESS_DATA 55	CompressData	multiple
JOE_COMMENT_DATA 55	Comment	multiple
JOE_ENERGY_DATA 55	EnergyData	multiple
JOE_PAIR_DATA 55	PairData	single attribute name (JOEGenericData.setAttribute(String) 55 )

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Field Summary
private  java.lang.String	defaultAttribut
static JOEDataType	JOE_COMMENT_DATA           Comment data.
static JOEDataType	JOE_COMPRESS_DATA           Description of the Field
static JOEDataType	JOE_ENERGY_DATA           Description of the Field
static JOEDataType	JOE_EXTERNAL_BOND_DATA           Description of the Field
static JOEDataType	JOE_PAIR_DATA           Pair data (descriptor data).
static JOEDataType	JOE_RGROUP_DATA           Rgroup data.
static JOEDataType	JOE_RING_DATA           Ring data.
static JOEDataType	JOE_ROTAMER_LIST           Description of the Field
static JOEDataType	JOE_SPECTRA_DATA           Description of the Field
static JOEDataType	JOE_UNDEFINED_DATA           Description of the Field
static JOEDataType	JOE_VIRTUAL_BOND_DATA           Description of the Field
private static java.util.LinkedList	usedTypes
private  int	value           Description of the Field

 

Constructor Summary
private	JOEDataType(int _value, java.lang.String _defaultAttr)           Constructor for the JOEDataType object

 

Method Summary
boolean	equals(java.lang.Object obj)           Description of the Method
static java.util.Iterator	getAllTypes()
java.lang.String	getDefaultAttr()           Gets the defaultAttr attribute of the JOEDataType object
java.lang.String	toString()           Convert this Object to a human-readable String.

 

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

 

Field Detail

usedTypes

private static final java.util.LinkedList usedTypes

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JOE_UNDEFINED_DATA

public static final JOEDataType JOE_UNDEFINED_DATA

Description of the Field

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JOE_PAIR_DATA

public static final JOEDataType JOE_PAIR_DATA

Pair data (descriptor data).

See Also:

JOEPairData

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JOE_ENERGY_DATA

public static final JOEDataType JOE_ENERGY_DATA

Description of the Field

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JOE_COMMENT_DATA

public static final JOEDataType JOE_COMMENT_DATA

Comment data.

See Also:

JOECommentData

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JOE_COMPRESS_DATA

public static final JOEDataType JOE_COMPRESS_DATA

Description of the Field

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JOE_EXTERNAL_BOND_DATA

public static final JOEDataType JOE_EXTERNAL_BOND_DATA

Description of the Field

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JOE_ROTAMER_LIST

public static final JOEDataType JOE_ROTAMER_LIST

Description of the Field

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JOE_VIRTUAL_BOND_DATA

public static final JOEDataType JOE_VIRTUAL_BOND_DATA

Description of the Field

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JOE_RING_DATA

public static final JOEDataType JOE_RING_DATA

Ring data.

See Also:

joelib.ring.JOERingData

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JOE_SPECTRA_DATA

public static final JOEDataType JOE_SPECTRA_DATA

Description of the Field

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JOE_RGROUP_DATA

public static final JOEDataType JOE_RGROUP_DATA

Rgroup data.

See Also:

JOERgroupData

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defaultAttribut

private java.lang.String defaultAttribut

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value

private int value

Description of the Field

Constructor Detail

JOEDataType

private JOEDataType(int _value,
                    java.lang.String _defaultAttr)

Constructor for the JOEDataType object

Method Detail

getAllTypes

public static java.util.Iterator getAllTypes()

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getDefaultAttr

public java.lang.String getDefaultAttr()

Gets the defaultAttr attribute of the JOEDataType object

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equals

public boolean equals(java.lang.Object obj)

Description of the Method

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toString

public java.lang.String toString()

Description copied from class: java.lang.Object

Convert this Object to a human-readable String. There are no limits placed on how long this String should be or what it should contain. We suggest you make it as intuitive as possible to be able to place it into System.out.println() 55 and such.

It is typical, but not required, to ensure that this method never completes abruptly with a java.lang.RuntimeException.

This method will be called when performing string concatenation with this object. If the result is null, string concatenation will instead use "null".

The default implementation returns getClass().getName() + "@" + Integer.toHexString(hashCode()).

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