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joelib.data
Class JOEIsotopeTable  

java.lang.Object
  joelib.data.JOEGlobalDataBase
      joelib.data.JOEIsotopeTable

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public class JOEIsotopeTable

extends JOEGlobalDataBase

Isotope element table. The definition file can be defined in the joelib.data.JOEIsotopeTable.resourceFile property in the wsi.ra.tool.PropertyHolder. The wsi.ra.tool.ResourceLoader loads the joelib.properties file for default.

Default:
joelib.data.JOEIsotopeTable.resourceFile=joelib/data/plain/isotope.txt

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Field Summary
private  java.util.Vector	_isotopes           java.util.Vector of type joelib.util.types.DoubleInt to store isotope number and mass.
protected static java.lang.String	DEFAULT_RESOURCE
private static JOEIsotopeTable	isotopeTable
private static org.apache.log4j.Category	logger

 

Fields inherited from class joelib.data.JOEGlobalDataBase

initialized, resourceFile

 

Constructor Summary
private	JOEIsotopeTable()           Constructor for the JOETypeTable object

 

Method Summary
void	finalize()           Description of the Method
double	getExactMass(int atomicNum)           Return the exact masss of the isotope.
double	getExactMass(int atomicNum, int isotope)           Return the exact masss of the isotope.
static JOEIsotopeTable	instance()           Description of the Method
void	parseLine(java.lang.String buffer)           Description of the Method

 

Methods inherited from class joelib.data.JOEGlobalDataBase

getLineCounter, init

 

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

logger

private static org.apache.log4j.Category logger

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isotopeTable

private static JOEIsotopeTable isotopeTable

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DEFAULT_RESOURCE

protected static final java.lang.String DEFAULT_RESOURCE

See Also:

Constant Field Values

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_isotopes

private java.util.Vector _isotopes

java.util.Vector of type joelib.util.types.DoubleInt to store isotope number and mass.

Constructor Detail

JOEIsotopeTable

private JOEIsotopeTable()

Constructor for the JOETypeTable object

Method Detail

finalize

public void finalize()

Description of the Method

Overrides:

finalize in class JOEGlobalDataBase

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instance

public static JOEIsotopeTable instance()

Description of the Method

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getExactMass

public double getExactMass(int atomicNum)

Return the exact masss of the isotope. (or by default, the most abundant isotope)

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getExactMass

public double getExactMass(int atomicNum,
                           int isotope)

Return the exact masss of the isotope. (or by default, the most abundant isotope)

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parseLine

public void parseLine(java.lang.String buffer)

Description of the Method

Specified by:

parseLine in class JOEGlobalDataBase

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