joelib.io.types.cml

Overview

Package

Class

Use

Deprecated

Index

Home >> All >> joelib >> io >> types >> [ cml overview ]

PREV PACKAGE NEXT PACKAGE

Package joelib.io.types.cml

Provides representating classes for the molecular import and export methods.

See:
Description

Interface Summary

CDOInterface DOCUMENT ME!

CMLMoleculeWriter Interface for a CML molecule writer.

CMLWriterProperties Interface for a CML molecule writer.

ConventionInterface This interface describes the procedures classes must implement to be plugable into the CMLHandler.

ModuleInterface This interface describes the procedures classes must implement to be plugable into the CMLHandler.

ResultCMLProperties Interface for a CML molecule writer.

Class Summary

CDKConvention This is an implementation for the CDK convention.

CDOAcceptedObjects List of names (String classes) of objects accepted by CDO.

CMLCoreModule Core CML 1.x and 2.0 elements are parsed by this class.

CMLErrorHandler CDK's SAX2 ErrorHandler for giving feedback on XML errors in the CML document.

CMLHandler SAX2 implementation for CML XML fragment reading.

CMLPropertyWriter Helper class for a CML molecule property (descriptor) writer.

CMLReactionModule

CMLResolver This class resolves DOCTYPE declaration for Chemical Markup Language (CML) files and uses a local version for validation.

CMLSymmetryWriter Helper class for a CML molecule symmetry writer.

MoleculeArray CML molecule array writer.

MoleculeFileCDO CDO object needed as interface with the JCFL library for reading CML encoded data.

MoleculeHuge CML molecule writing all informations explicitely.

MoleculeLarge CML molecule writer which uses some arrays to avoid overhead.

XMLHandler DOCUMENT ME!

XMLSpecialCharacter Checks and converts XML special characters.

Package joelib.io.types.cml Description