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joelib.io.types.cml
Class CDKConvention  

java.lang.Object
  joelib.io.types.cml.CMLCoreModule
      joelib.io.types.cml.CDKConvention

All Implemented Interfaces:

ModuleInterface

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public class CDKConvention

extends CMLCoreModule

This is an implementation for the CDK convention.

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Field Summary
private  boolean	isBond
private static org.apache.log4j.Category	logger

 

Fields inherited from class joelib.io.types.cml.CMLCoreModule

ANGLE, array, ARRAY, arrays, arrayTitle, ATOM, ATOMARRAY, atomElements, atomParities, BOND, BOND_STEREO, bondARef1, bondARef2, BONDARRAY, bondid, bondStereo, BUILTIN, cdo, COORDINATE2, COORDINATE3, CRYSTAL, curRef, currentChars, currentElement, delimiter, ELECTRON, elements, elementTitle, elid, elsym, FEATURE, FLOAT, FLOATARRAY, FLOATMATRIX, formalCharges, hCounts, INTEGER, INTEGERARRAY, isotopes, LINK, LIST, matrices, matrix, MATRIX, matrixColumns, matrixDelimiter, matrixRows, matrixTitle, MOLECULE, moleculeName, NAME, order, partialCharges, REACTION, scalar, SCALAR, scalars, SEQUENCE, stereoGiven, STRING, STRINGARRAY, strings, SYSTEMID, TORSION, UNKNOWN, x2, x3, y2, y3, z3

 

Constructor Summary

CDKConvention(CDOInterface cdo)

CDKConvention(ModuleInterface conv)

 

Method Summary
void	characterData(char[] ch, int start, int length)
void	endDocument()
void	endElement(java.lang.String uri, java.lang.String local, java.lang.String raw)
CDOInterface	returnCDO()
void	startDocument()
void	startElement(java.lang.String uri, java.lang.String local, java.lang.String raw, org.xml.sax.Attributes atts)

 

Methods inherited from class joelib.io.types.cml.CMLCoreModule

inherit, newMolecule, notify, setCurrentElement, storeData

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

logger

private static org.apache.log4j.Category logger

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isBond

private boolean isBond

Constructor Detail

CDKConvention

public CDKConvention(CDOInterface cdo)

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CDKConvention

public CDKConvention(ModuleInterface conv)

Method Detail

characterData

public void characterData(char[] ch,
                          int start,
                          int length)

Specified by:

characterData in interface ModuleInterface

Overrides:

characterData in class CMLCoreModule

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endDocument

public void endDocument()

Specified by:

endDocument in interface ModuleInterface

Overrides:

endDocument in class CMLCoreModule

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endElement

public void endElement(java.lang.String uri,
                       java.lang.String local,
                       java.lang.String raw)

Specified by:

endElement in interface ModuleInterface

Overrides:

endElement in class CMLCoreModule

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returnCDO

public CDOInterface returnCDO()

Specified by:

returnCDO in interface ModuleInterface

Overrides:

returnCDO in class CMLCoreModule

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startDocument

public void startDocument()

Specified by:

startDocument in interface ModuleInterface

Overrides:

startDocument in class CMLCoreModule

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startElement

public void startElement(java.lang.String uri,
                         java.lang.String local,
                         java.lang.String raw,
                         org.xml.sax.Attributes atts)

Specified by:

startElement in interface ModuleInterface

Overrides:

startElement in class CMLCoreModule

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> joelib >> io >> types >> [ cml overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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