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joelib.io.types.cml
Class MoleculeFileCDO  

java.lang.Object
  joelib.io.types.cml.MoleculeFileCDO

All Implemented Interfaces:

CDOInterface

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public class MoleculeFileCDO

extends java.lang.Object

implements CDOInterface

CDO object needed as interface with the JCFL library for reading CML encoded data.

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Field Summary
private  java.util.Hashtable	atomEnumeration
private  int	bond_a1
private  int	bond_a2
private  int	bond_EZ
private  int	bond_order
private  int	bond_stereo
private  java.util.Vector	c2Dx
private  java.util.Vector	c2Dy
private  java.util.Vector	c3Dx
private  java.util.Vector	c3Dy
private  java.util.Vector	c3Dz
private  joelib.molecule.JOEAtom	currentAtom
private  joelib.molecule.JOEMol	currentMolecule
private  java.util.Vector	ezInformations           Of type joelib.util.types.BondInt
private static org.apache.log4j.Category	logger           Obtain a suitable logger.
private  int	molIndex
private  int	numberOfAtoms
private  java.util.Hashtable	strings
private  java.util.Hashtable	unparsed
private  double	x_2D
private  double	x_3D
private  double	y_2D
private  double	y_3D
private  double	z_3D

 

Constructor Summary

MoleculeFileCDO()

 

Method Summary
CDOAcceptedObjects	acceptObjects()           Procedure required by the CDOInterface.
void	endDocument()           Procedure required by the CDOInterface.
void	endObject(java.lang.String objectType)           Procedure required by the CDOInterface.
void	setDocumentProperty(java.lang.String type, java.lang.Object value)           Procedure required by the CDOInterface.
void	setMolecule(joelib.molecule.JOEMol mol)           Basic contructor
void	setObjectProperty(java.lang.String objectType, java.lang.String propertyType, java.lang.Object propertyValue)           Procedure required by the CDOInterface.
void	startDocument()           Procedure required by the CDOInterface.
void	startObject(java.lang.String objectType)           Procedure required by the CDOInterface.

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

logger

private static org.apache.log4j.Category logger

Obtain a suitable logger.

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atomEnumeration

private java.util.Hashtable atomEnumeration

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strings

private java.util.Hashtable strings

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unparsed

private java.util.Hashtable unparsed

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currentAtom

private joelib.molecule.JOEAtom currentAtom

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currentMolecule

private joelib.molecule.JOEMol currentMolecule

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c2Dx

private java.util.Vector c2Dx

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c2Dy

private java.util.Vector c2Dy

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c3Dx

private java.util.Vector c3Dx

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c3Dy

private java.util.Vector c3Dy

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c3Dz

private java.util.Vector c3Dz

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ezInformations

private java.util.Vector ezInformations

Of type joelib.util.types.BondInt

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x_2D

private double x_2D

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x_3D

private double x_3D

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y_2D

private double y_2D

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y_3D

private double y_3D

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z_3D

private double z_3D

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bond_EZ

private int bond_EZ

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bond_a1

private int bond_a1

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bond_a2

private int bond_a2

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bond_order

private int bond_order

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bond_stereo

private int bond_stereo

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molIndex

private int molIndex

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numberOfAtoms

private int numberOfAtoms

Constructor Detail

MoleculeFileCDO

public MoleculeFileCDO()

Method Detail

setDocumentProperty

public void setDocumentProperty(java.lang.String type,
                                java.lang.Object value)

Procedure required by the CDOInterface. This methodName is only supposed to be called by the JCFL library

Specified by:

setDocumentProperty in interface CDOInterface

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setMolecule

public void setMolecule(joelib.molecule.JOEMol mol)

Basic contructor

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setObjectProperty

public void setObjectProperty(java.lang.String objectType,
                              java.lang.String propertyType,
                              java.lang.Object propertyValue)

Procedure required by the CDOInterface. This methodName is only supposed to be called by the JCFL library

Specified by:

setObjectProperty in interface CDOInterface

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acceptObjects

public CDOAcceptedObjects acceptObjects()

Procedure required by the CDOInterface. This methodName is only supposed to be called by the JCFL library

Specified by:

acceptObjects in interface CDOInterface

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endDocument

public void endDocument()

Procedure required by the CDOInterface. This methodName is only supposed to be called by the JCFL library

Specified by:

endDocument in interface CDOInterface

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endObject

public void endObject(java.lang.String objectType)

Procedure required by the CDOInterface. This methodName is only supposed to be called by the JCFL library

Specified by:

endObject in interface CDOInterface

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startDocument

public void startDocument()

Procedure required by the CDOInterface. This methodName is only supposed to be called by the JCFL library

Specified by:

startDocument in interface CDOInterface

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startObject

public void startObject(java.lang.String objectType)

Procedure required by the CDOInterface. This methodName is only supposed to be called by the JCFL library

Specified by:

startObject in interface CDOInterface

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> joelib >> io >> types >> [ cml overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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