|
|||||||||
| Home >> All >> joelib >> io >> types >> [ cml overview ] | PREV NEXT | ||||||||
A
- ANGLE - Static variable in class joelib.io.types.cml.CMLCoreModule
- ARRAY - Static variable in class joelib.io.types.cml.CMLCoreModule
- ATOM - Static variable in class joelib.io.types.cml.CMLCoreModule
- ATOMARRAY - Static variable in class joelib.io.types.cml.CMLCoreModule
- abortOnErrors - Variable in class joelib.io.types.cml.CMLErrorHandler
- acceptObjects() - Method in interface joelib.io.types.cml.CDOInterface
- The next procedure must be implemented by each CDO and return a CDOAcceptedObjects class with the names of the objects that can be handled.
- acceptObjects() - Method in class joelib.io.types.cml.MoleculeFileCDO
- Procedure required by the CDOInterface.
- add(String) - Method in class joelib.io.types.cml.CDOAcceptedObjects
- Adds the name of an accepted object.
- addCMLProperty(StringString) - Method in interface joelib.io.types.cml.ResultCMLProperties
- array - Variable in class joelib.io.types.cml.CMLCoreModule
- arrayTitle - Variable in class joelib.io.types.cml.CMLCoreModule
- arrays - Variable in class joelib.io.types.cml.CMLCoreModule
- atomElements - Variable in class joelib.io.types.cml.CMLCoreModule
- atomEnumeration - Variable in class joelib.io.types.cml.MoleculeFileCDO
- atomParities - Variable in class joelib.io.types.cml.CMLCoreModule
B
- BOND - Static variable in class joelib.io.types.cml.CMLCoreModule
- BONDARRAY - Static variable in class joelib.io.types.cml.CMLCoreModule
- BOND_STEREO - Static variable in class joelib.io.types.cml.CMLCoreModule
- BUILTIN - Variable in class joelib.io.types.cml.CMLCoreModule
- bondARef1 - Variable in class joelib.io.types.cml.CMLCoreModule
- bondARef2 - Variable in class joelib.io.types.cml.CMLCoreModule
- bondStereo - Variable in class joelib.io.types.cml.CMLCoreModule
- bond_EZ - Variable in class joelib.io.types.cml.MoleculeFileCDO
- bond_a1 - Variable in class joelib.io.types.cml.MoleculeFileCDO
- bond_a2 - Variable in class joelib.io.types.cml.MoleculeFileCDO
- bond_order - Variable in class joelib.io.types.cml.MoleculeFileCDO
- bond_stereo - Variable in class joelib.io.types.cml.MoleculeFileCDO
- bondid - Variable in class joelib.io.types.cml.CMLCoreModule
C
- CDKConvention - class joelib.io.types.cml.CDKConvention.
- This is an implementation for the CDK convention.
- CDKConvention(CDOInterface) - Constructor for class joelib.io.types.cml.CDKConvention
- CDKConvention(ModuleInterface) - Constructor for class joelib.io.types.cml.CDKConvention
- CDOAcceptedObjects - class joelib.io.types.cml.CDOAcceptedObjects.
- List of names (String classes) of objects accepted by CDO.
- CDOAcceptedObjects() - Constructor for class joelib.io.types.cml.CDOAcceptedObjects
- Constructor.
- CDOInterface - interface joelib.io.types.cml.CDOInterface.
- DOCUMENT ME!
- CMLCoreModule - class joelib.io.types.cml.CMLCoreModule.
- Core CML 1.x and 2.0 elements are parsed by this class.
- CMLCoreModule(CDOInterface) - Constructor for class joelib.io.types.cml.CMLCoreModule
- CMLCoreModule(ModuleInterface) - Constructor for class joelib.io.types.cml.CMLCoreModule
- CMLErrorHandler - class joelib.io.types.cml.CMLErrorHandler.
- CDK's SAX2 ErrorHandler for giving feedback on XML errors in the CML document.
- CMLErrorHandler() - Constructor for class joelib.io.types.cml.CMLErrorHandler
- Constructor a SAX2 ErrorHandler that uses the cdk.tools.LoggingTool class to output errors and warnings to.
- CMLHandler - class joelib.io.types.cml.CMLHandler.
- SAX2 implementation for CML XML fragment reading.
- CMLHandler(CDOInterface) - Constructor for class joelib.io.types.cml.CMLHandler
- Constructor for the CMLHandler.
- CMLMoleculeWriter - interface joelib.io.types.cml.CMLMoleculeWriter.
- Interface for a CML molecule writer.
- CMLPropertyWriter - class joelib.io.types.cml.CMLPropertyWriter.
- Helper class for a CML molecule property (descriptor) writer.
- CMLPropertyWriter() - Constructor for class joelib.io.types.cml.CMLPropertyWriter
- CMLReactionModule - class joelib.io.types.cml.CMLReactionModule.
- CMLReactionModule(CDOInterface) - Constructor for class joelib.io.types.cml.CMLReactionModule
- CMLReactionModule(ModuleInterface) - Constructor for class joelib.io.types.cml.CMLReactionModule
- CMLResolver - class joelib.io.types.cml.CMLResolver.
- This class resolves DOCTYPE declaration for Chemical Markup Language (CML) files and uses a local version for validation.
- CMLResolver() - Constructor for class joelib.io.types.cml.CMLResolver
- CMLResolver(String) - Constructor for class joelib.io.types.cml.CMLResolver
- CMLSymmetryWriter - class joelib.io.types.cml.CMLSymmetryWriter.
- Helper class for a CML molecule symmetry writer.
- CMLSymmetryWriter() - Constructor for class joelib.io.types.cml.CMLSymmetryWriter
- CMLWriterProperties - interface joelib.io.types.cml.CMLWriterProperties.
- Interface for a CML molecule writer.
- COORDINATE2 - Static variable in class joelib.io.types.cml.CMLCoreModule
- COORDINATE3 - Static variable in class joelib.io.types.cml.CMLCoreModule
- COORDINATES_2D_X - Static variable in class joelib.io.types.cml.CMLPropertyWriter
- COORDINATES_2D_Y - Static variable in class joelib.io.types.cml.CMLPropertyWriter
- COORDINATES_3D_X - Static variable in class joelib.io.types.cml.CMLPropertyWriter
- COORDINATES_3D_Y - Static variable in class joelib.io.types.cml.CMLPropertyWriter
- COORDINATES_3D_Z - Static variable in class joelib.io.types.cml.CMLPropertyWriter
- CRYSTAL - Static variable in class joelib.io.types.cml.CMLCoreModule
- ConventionInterface - interface joelib.io.types.cml.ConventionInterface.
- This interface describes the procedures classes must implement to be plugable into the CMLHandler.
- c2Dx - Variable in class joelib.io.types.cml.MoleculeFileCDO
- c2Dy - Variable in class joelib.io.types.cml.MoleculeFileCDO
- c3Dx - Variable in class joelib.io.types.cml.MoleculeFileCDO
- c3Dy - Variable in class joelib.io.types.cml.MoleculeFileCDO
- c3Dz - Variable in class joelib.io.types.cml.MoleculeFileCDO
- cdo - Variable in class joelib.io.types.cml.CMLCoreModule
- characterData(char[], int, int) - Method in class joelib.io.types.cml.CDKConvention
- characterData(char[], int, int) - Method in class joelib.io.types.cml.CMLCoreModule
- characterData(char[], int, int) - Method in class joelib.io.types.cml.CMLReactionModule
- characterData(char[], int, int) - Method in interface joelib.io.types.cml.ModuleInterface
- characters(char[], int, int) - Method in class joelib.io.types.cml.CMLHandler
- Implementation of the characters() procedure overwriting the DefaultHandler interface.
- characters(char[], int, int) - Method in class joelib.io.types.cml.XMLHandler
- cml - Static variable in class joelib.io.types.cml.CMLPropertyWriter
- cml - Static variable in class joelib.io.types.cml.CMLSymmetryWriter
- contains(String) - Method in class joelib.io.types.cml.CDOAcceptedObjects
- Determine if an object name is contained in this list.
- conv - Variable in class joelib.io.types.cml.CMLHandler
- conv - Variable in class joelib.io.types.cml.XMLHandler
- convertPlain2XML(String) - Static method in class joelib.io.types.cml.XMLSpecialCharacter
- Converts plain strings to XML formatted string entries.
- curRef - Variable in class joelib.io.types.cml.CMLCoreModule
- currentAtom - Variable in class joelib.io.types.cml.MoleculeFileCDO
- currentChars - Variable in class joelib.io.types.cml.CMLCoreModule
- currentElement - Variable in class joelib.io.types.cml.CMLCoreModule
- currentMolecule - Variable in class joelib.io.types.cml.MoleculeFileCDO
D
- ddtResourceDir - Variable in class joelib.io.types.cml.CMLResolver
- delimiter - Variable in class joelib.io.types.cml.CMLCoreModule
- doctypeDecl(String, String, String) - Method in class joelib.io.types.cml.CMLHandler
- doctypeDecl(String, String, String) - Method in class joelib.io.types.cml.XMLHandler
E
- ELECTRON - Static variable in class joelib.io.types.cml.CMLCoreModule
- elementTitle - Variable in class joelib.io.types.cml.CMLCoreModule
- elements() - Method in class joelib.io.types.cml.CDOAcceptedObjects
- Returns the names in this list as a Enumeration class.
- elements - Variable in class joelib.io.types.cml.CMLCoreModule
- elid - Variable in class joelib.io.types.cml.CMLCoreModule
- elsym - Variable in class joelib.io.types.cml.CMLCoreModule
- endDocument() - Method in class joelib.io.types.cml.CDKConvention
- endDocument() - Method in interface joelib.io.types.cml.CDOInterface
- Called just after XML parsing has ended.
- endDocument() - Method in class joelib.io.types.cml.CMLCoreModule
- endDocument() - Method in class joelib.io.types.cml.CMLHandler
- Calling this procedure signals the end of the XML document.
- endDocument() - Method in class joelib.io.types.cml.CMLReactionModule
- endDocument() - Method in interface joelib.io.types.cml.ModuleInterface
- endDocument() - Method in class joelib.io.types.cml.MoleculeFileCDO
- Procedure required by the CDOInterface.
- endDocument() - Method in class joelib.io.types.cml.XMLHandler
- endElement(String, String, String) - Method in class joelib.io.types.cml.CDKConvention
- endElement(String, String, String) - Method in class joelib.io.types.cml.CMLCoreModule
- endElement(String, String, String) - Method in class joelib.io.types.cml.CMLHandler
- endElement(String, String, String) - Method in class joelib.io.types.cml.CMLReactionModule
- endElement(String, String, String) - Method in interface joelib.io.types.cml.ModuleInterface
- endElement(String) - Method in class joelib.io.types.cml.XMLHandler
- endObject(String) - Method in interface joelib.io.types.cml.CDOInterface
- End the process of adding a new object to the CDO of a certain type.
- endObject(String) - Method in class joelib.io.types.cml.MoleculeFileCDO
- Procedure required by the CDOInterface.
- error(SAXParseException) - Method in class joelib.io.types.cml.CMLErrorHandler
- Outputs a SAXParseException error to the logger.
- ezInformations - Variable in class joelib.io.types.cml.MoleculeFileCDO
- Of type joelib.util.types.BondInt
F
- FEATURE - Static variable in class joelib.io.types.cml.CMLCoreModule
- FLOAT - Static variable in class joelib.io.types.cml.CMLCoreModule
- FLOATARRAY - Static variable in class joelib.io.types.cml.CMLCoreModule
- FLOATMATRIX - Static variable in class joelib.io.types.cml.CMLCoreModule
- fatalError(SAXParseException) - Method in class joelib.io.types.cml.CMLErrorHandler
- Outputs as fatal SAXParseException error to the logger.
- forceWriteFormalCharge() - Method in interface joelib.io.types.cml.CMLWriterProperties
- formalCharges - Variable in class joelib.io.types.cml.CMLCoreModule
G
- getCMLProperties() - Method in interface joelib.io.types.cml.ResultCMLProperties
- getCMLType(String) - Method in class joelib.io.types.cml.CMLResolver
- Returns an InputSource of the appropriate CML DTD.
- getCMLversion() - Method in interface joelib.io.types.cml.CMLWriterProperties
- getExternalSubset(String, String) - Method in class joelib.io.types.cml.CMLResolver
- Not implemented: always returns null.
H
- hCounts - Variable in class joelib.io.types.cml.CMLCoreModule
I
- INTEGER - Static variable in class joelib.io.types.cml.CMLCoreModule
- INTEGERARRAY - Static variable in class joelib.io.types.cml.CMLCoreModule
- inherit(ModuleInterface) - Method in class joelib.io.types.cml.CMLCoreModule
- inherit(ModuleInterface) - Method in interface joelib.io.types.cml.ModuleInterface
- initialize() - Method in class joelib.io.types.cml.CMLCoreModule
- isBond - Variable in class joelib.io.types.cml.CDKConvention
- isotopes - Variable in class joelib.io.types.cml.CMLCoreModule
J
- joelib.io.types.cml - package joelib.io.types.cml
- Provides representating classes for the molecular import and export methods.
L
- LINK - Static variable in class joelib.io.types.cml.CMLCoreModule
- LIST - Static variable in class joelib.io.types.cml.CMLCoreModule
- logger - Static variable in class joelib.io.types.cml.CDKConvention
- logger - Static variable in class joelib.io.types.cml.CMLCoreModule
- logger - Static variable in class joelib.io.types.cml.CMLErrorHandler
- logger - Static variable in class joelib.io.types.cml.CMLHandler
- logger - Static variable in class joelib.io.types.cml.CMLPropertyWriter
- Obtain a suitable logger.
- logger - Static variable in class joelib.io.types.cml.CMLReactionModule
- logger - Static variable in class joelib.io.types.cml.CMLResolver
- logger - Static variable in class joelib.io.types.cml.CMLSymmetryWriter
- Obtain a suitable logger.
- logger - Static variable in class joelib.io.types.cml.MoleculeArray
- Obtain a suitable logger.
- logger - Static variable in class joelib.io.types.cml.MoleculeFileCDO
- Obtain a suitable logger.
- logger - Static variable in class joelib.io.types.cml.MoleculeHuge
- Obtain a suitable logger.
- logger - Static variable in class joelib.io.types.cml.MoleculeLarge
- Obtain a suitable logger.
M
- MATRIX - Static variable in class joelib.io.types.cml.CMLCoreModule
- MOLECULE - Static variable in class joelib.io.types.cml.CMLCoreModule
- ModuleInterface - interface joelib.io.types.cml.ModuleInterface.
- This interface describes the procedures classes must implement to be plugable into the CMLHandler.
- MoleculeArray - class joelib.io.types.cml.MoleculeArray.
- CML molecule array writer.
- MoleculeArray(CMLWriterProperties) - Constructor for class joelib.io.types.cml.MoleculeArray
- MoleculeFileCDO - class joelib.io.types.cml.MoleculeFileCDO.
- CDO object needed as interface with the JCFL library for reading CML encoded data.
- MoleculeFileCDO() - Constructor for class joelib.io.types.cml.MoleculeFileCDO
- MoleculeHuge - class joelib.io.types.cml.MoleculeHuge.
- CML molecule writing all informations explicitely.
- MoleculeHuge(CMLWriterProperties) - Constructor for class joelib.io.types.cml.MoleculeHuge
- MoleculeLarge - class joelib.io.types.cml.MoleculeLarge.
- CML molecule writer which uses some arrays to avoid overhead.
- MoleculeLarge(CMLWriterProperties) - Constructor for class joelib.io.types.cml.MoleculeLarge
- matrices - Variable in class joelib.io.types.cml.CMLCoreModule
- matrix - Variable in class joelib.io.types.cml.CMLCoreModule
- matrixColumns - Variable in class joelib.io.types.cml.CMLCoreModule
- matrixDelimiter - Variable in class joelib.io.types.cml.CMLCoreModule
- matrixRows - Variable in class joelib.io.types.cml.CMLCoreModule
- matrixTitle - Variable in class joelib.io.types.cml.CMLCoreModule
- molIndex - Variable in class joelib.io.types.cml.MoleculeFileCDO
- moleculeName - Variable in class joelib.io.types.cml.CMLCoreModule
N
- NAME - Static variable in class joelib.io.types.cml.CMLCoreModule
- newMolecule() - Method in class joelib.io.types.cml.CMLCoreModule
- notify(String, String, int, int) - Method in class joelib.io.types.cml.CMLCoreModule
- numberOfAtoms - Variable in class joelib.io.types.cml.MoleculeFileCDO
O
- objects - Variable in class joelib.io.types.cml.CDOAcceptedObjects
- order - Variable in class joelib.io.types.cml.CMLCoreModule
P
- partialCharges - Variable in class joelib.io.types.cml.CMLCoreModule
- print(String, SAXParseException) - Method in class joelib.io.types.cml.CMLErrorHandler
- Internal procedure that outputs an SAXParseException with a significance level to the cdk.tools.LoggingTool logger.
R
- REACTION - Static variable in class joelib.io.types.cml.CMLCoreModule
- ResultCMLProperties - interface joelib.io.types.cml.ResultCMLProperties.
- Interface for a CML molecule writer.
- registerConvention(String, ModuleInterface) - Method in class joelib.io.types.cml.CMLHandler
- reportErrors - Variable in class joelib.io.types.cml.CMLErrorHandler
- resolveEntity(String, String, String, String) - Method in class joelib.io.types.cml.CMLResolver
- Not implemented, but uses resolveEntity(String publicId, String systemId) instead.
- resolveEntity(String, String) - Method in class joelib.io.types.cml.CMLResolver
- Resolves SYSTEM and PUBLIC identifiers for CML DTDs.
- returnCDO() - Method in class joelib.io.types.cml.CDKConvention
- returnCDO() - Method in class joelib.io.types.cml.CMLCoreModule
- returnCDO() - Method in class joelib.io.types.cml.CMLHandler
- returnCDO() - Method in class joelib.io.types.cml.CMLReactionModule
- returnCDO() - Method in interface joelib.io.types.cml.ModuleInterface
- returnCDO() - Method in class joelib.io.types.cml.XMLHandler
S
- SCALAR - Static variable in class joelib.io.types.cml.CMLCoreModule
- SEQUENCE - Static variable in class joelib.io.types.cml.CMLCoreModule
- STRING - Static variable in class joelib.io.types.cml.CMLCoreModule
- STRINGARRAY - Static variable in class joelib.io.types.cml.CMLCoreModule
- SYSTEMID - Variable in class joelib.io.types.cml.CMLCoreModule
- scalar - Variable in class joelib.io.types.cml.CMLCoreModule
- scalars - Variable in class joelib.io.types.cml.CMLCoreModule
- setCurrentElement(String) - Method in class joelib.io.types.cml.CMLCoreModule
- setDocumentProperty(String, Object) - Method in interface joelib.io.types.cml.CDOInterface
- Sets a property for this document.
- setDocumentProperty(String, Object) - Method in class joelib.io.types.cml.MoleculeFileCDO
- Procedure required by the CDOInterface.
- setMolecule(JOEMol) - Method in class joelib.io.types.cml.MoleculeFileCDO
- Basic contructor
- setObjectProperty(String, String, Object) - Method in interface joelib.io.types.cml.CDOInterface
- Sets a property of the object being added.
- setObjectProperty(String, String, Object) - Method in class joelib.io.types.cml.MoleculeFileCDO
- Procedure required by the CDOInterface.
- startDocument() - Method in class joelib.io.types.cml.CDKConvention
- startDocument() - Method in interface joelib.io.types.cml.CDOInterface
- Called just before XML parsing is started.
- startDocument() - Method in class joelib.io.types.cml.CMLCoreModule
- startDocument() - Method in class joelib.io.types.cml.CMLHandler
- startDocument() - Method in class joelib.io.types.cml.CMLReactionModule
- startDocument() - Method in interface joelib.io.types.cml.ModuleInterface
- startDocument() - Method in class joelib.io.types.cml.MoleculeFileCDO
- Procedure required by the CDOInterface.
- startDocument() - Method in class joelib.io.types.cml.XMLHandler
- startElement(String, String, String, Attributes) - Method in class joelib.io.types.cml.CDKConvention
- startElement(String, String, String, Attributes) - Method in class joelib.io.types.cml.CMLCoreModule
- startElement(String, String, String, Attributes) - Method in class joelib.io.types.cml.CMLHandler
- startElement(String, String, String, Attributes) - Method in class joelib.io.types.cml.CMLReactionModule
- startElement(String, String, String, Attributes) - Method in interface joelib.io.types.cml.ModuleInterface
- startElement(String, AttributeList) - Method in class joelib.io.types.cml.XMLHandler
- startObject(String) - Method in interface joelib.io.types.cml.CDOInterface
- Start the process of adding a new object to the CDO of a certain type.
- startObject(String) - Method in class joelib.io.types.cml.MoleculeFileCDO
- Procedure required by the CDOInterface.
- stereoGiven - Variable in class joelib.io.types.cml.CMLCoreModule
- storeData() - Method in class joelib.io.types.cml.CMLCoreModule
- strings - Variable in class joelib.io.types.cml.CMLCoreModule
- strings - Variable in class joelib.io.types.cml.MoleculeFileCDO
T
- TORSION - Static variable in class joelib.io.types.cml.CMLCoreModule
U
- UNKNOWN - Static variable in class joelib.io.types.cml.CMLCoreModule
- unparsed - Variable in class joelib.io.types.cml.MoleculeFileCDO
- userConventions - Variable in class joelib.io.types.cml.CMLHandler
W
- warning(SAXParseException) - Method in class joelib.io.types.cml.CMLErrorHandler
- Outputs a SAXParseException warning to the logger.
- write(PrintStream, JOEMol, boolean, Vector) - Method in interface joelib.io.types.cml.CMLMoleculeWriter
- write(PrintStream, JOEMol, boolean, Vector) - Method in class joelib.io.types.cml.MoleculeArray
- Description of the Method
- write(PrintStream, JOEMol, boolean, Vector) - Method in class joelib.io.types.cml.MoleculeHuge
- write(PrintStream, JOEAtom, boolean, boolean, AtomDoubleResult, AtomDoubleResult) - Method in class joelib.io.types.cml.MoleculeHuge
- Description of the Method
- write(PrintStream, JOEBond) - Method in class joelib.io.types.cml.MoleculeHuge
- Description of the Method
- write(PrintStream, JOEMol, boolean, Vector) - Method in class joelib.io.types.cml.MoleculeLarge
- write(PrintStream, JOEAtom, boolean, boolean, AtomDoubleResult, AtomDoubleResult) - Method in class joelib.io.types.cml.MoleculeLarge
- Description of the Method
- write(PrintStream, JOEBond) - Method in class joelib.io.types.cml.MoleculeLarge
- Description of the Method
- write2D(PrintStream, XYZVector, AtomDoubleResult, AtomDoubleResult, int) - Method in class joelib.io.types.cml.MoleculeHuge
- write2D(PrintStream, XYZVector, AtomDoubleResult, AtomDoubleResult, int) - Method in class joelib.io.types.cml.MoleculeLarge
- write3D(PrintStream, XYZVector) - Method in class joelib.io.types.cml.MoleculeHuge
- Description of the Method
- write3D(PrintStream, XYZVector) - Method in class joelib.io.types.cml.MoleculeLarge
- Description of the Method
- writeArrayProperties(PrintStream, Enumeration) - Static method in class joelib.io.types.cml.CMLPropertyWriter
- writeAxes(PrintStream, String, SymmetryElement[]) - Static method in class joelib.io.types.cml.CMLSymmetryWriter
- writeAxisTypeScalar(PrintStream, String, int) - Static method in class joelib.io.types.cml.CMLSymmetryWriter
- writeDoubleArray(PrintStream, String, double[]) - Static method in class joelib.io.types.cml.CMLSymmetryWriter
- writeDoubleScalar(PrintStream, String, double) - Static method in class joelib.io.types.cml.CMLSymmetryWriter
- writeImpliciteHydrogens() - Method in interface joelib.io.types.cml.CMLWriterProperties
- writeInversionCenter(PrintStream, SymmetryElement) - Static method in class joelib.io.types.cml.CMLSymmetryWriter
- writeMatrixProperties(PrintStream, Enumeration) - Static method in class joelib.io.types.cml.CMLPropertyWriter
- writePairData(CMLWriterProperties, PrintStream, JOEPairData) - Static method in class joelib.io.types.cml.CMLPropertyWriter
- writePartialCharge() - Method in interface joelib.io.types.cml.CMLWriterProperties
- writePlanes(PrintStream, SymmetryElement[]) - Static method in class joelib.io.types.cml.CMLSymmetryWriter
- writeProperties(CMLWriterProperties, PrintStream, JOEMol, boolean, Vector) - Static method in class joelib.io.types.cml.CMLPropertyWriter
- writeProperties(PrintStream, Enumeration) - Static method in class joelib.io.types.cml.CMLPropertyWriter
- writeSymmetry(PrintStream, JOEMol) - Static method in class joelib.io.types.cml.CMLSymmetryWriter
- writeSymmetryInformations() - Method in interface joelib.io.types.cml.CMLWriterProperties
- writerProp - Variable in class joelib.io.types.cml.MoleculeArray
- writerProp - Variable in class joelib.io.types.cml.MoleculeHuge
- writerProp - Variable in class joelib.io.types.cml.MoleculeLarge
X
- XMLHandler - class joelib.io.types.cml.XMLHandler.
- DOCUMENT ME!
- XMLHandler(CDOInterface) - Constructor for class joelib.io.types.cml.XMLHandler
- XMLSpecialCharacter - class joelib.io.types.cml.XMLSpecialCharacter.
- Checks and converts XML special characters.
- XMLSpecialCharacter() - Constructor for class joelib.io.types.cml.XMLSpecialCharacter
- x2 - Variable in class joelib.io.types.cml.CMLCoreModule
- x3 - Variable in class joelib.io.types.cml.CMLCoreModule
- x_2D - Variable in class joelib.io.types.cml.MoleculeFileCDO
- x_3D - Variable in class joelib.io.types.cml.MoleculeFileCDO
Y
- y2 - Variable in class joelib.io.types.cml.CMLCoreModule
- y3 - Variable in class joelib.io.types.cml.CMLCoreModule
- y_2D - Variable in class joelib.io.types.cml.MoleculeFileCDO
- y_3D - Variable in class joelib.io.types.cml.MoleculeFileCDO
Z
- z3 - Variable in class joelib.io.types.cml.CMLCoreModule
- z_3D - Variable in class joelib.io.types.cml.MoleculeFileCDO
A B C D E F G H I J L M N O P R S T U W X Y Z
|
|||||||||
| Home >> All >> joelib >> io >> types >> [ cml overview ] | PREV NEXT | ||||||||