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•	joelib.io.types.cml.elements.* (4)

• joelib.io.types.cml: Javadoc index of package joelib.io.types.cml.


Package Samples:

• joelib.io.types.cml.elements: Provides helper classes for processing the Chemical Markup Language (CML) [, , , ].  

Classes:

• CMLHandler: SAX2 implementation for CML XML fragment reading. CML Core is supported as well is the CRML module. Data is stored into the Chemical Document Object which is passed when instantiating this class.
• CMLResolver: This class resolves DOCTYPE declaration for Chemical Markup Language (CML) files and uses a local version for validation. More information about CML can be found at http://www.xml-cml.org/.
• CMLCoreModule: Core CML 1.x and 2.0 elements are parsed by this class. Please file a bug report if this parser fails to parse a certain element or attribute value in a valid CML document.
• CMLErrorHandler: CDK's SAX2 ErrorHandler for giving feedback on XML errors in the CML document. Output is redirected to org.openscience.cdk.tools.LoggingTool.
• ConventionInterface: This interface describes the procedures classes must implement to be plugable into the CMLHandler. Most procedures reflect those in SAX2.
• ModuleInterface: This interface describes the procedures classes must implement to be plugable into the CMLHandler. Most procedures reflect those in SAX2.
• MoleculeFileCDO: CDO object needed as interface with the JCFL library for reading CML encoded data.
• CMLPropertyWriter: Helper class for a CML molecule property (descriptor) writer.
• MoleculeLarge: CML molecule writer which uses some arrays to avoid overhead.
• CDOAcceptedObjects: List of names (String classes) of objects accepted by CDO.
• MoleculeHuge: CML molecule writing all informations explicitely.
• CDKConvention: This is an implementation for the CDK convention.
• CMLSymmetryWriter: Helper class for a CML molecule symmetry writer.
• XMLSpecialCharacter: Checks and converts XML special characters.
• CMLMoleculeWriter: Interface for a CML molecule writer.
• CMLWriterProperties: Interface for a CML molecule writer.
• ResultCMLProperties: Interface for a CML molecule writer.
• ElementCML: Interface for defining CML elements.
• MoleculeArray: CML molecule array writer.
• ArrayCML: Scalar CML element.
• MatrixCML: Scalar CML element.
• ScalarCML: Scalar CML element.
• CDOInterface: DOCUMENT ME!
• XMLHandler: DOCUMENT ME!
• CMLReactionModule

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