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joelib.process.types
Class DescBinning  

java.lang.Object
  joelib.process.SimpleProcess
      joelib.process.types.DescBinning

All Implemented Interfaces:

joelib.process.JOEProcess, joelib.util.PropertyAcceptor, java.io.Serializable

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public class DescBinning

extends joelib.process.SimpleProcess

implements java.io.Serializable

Calling processor classes if the filter rule fits.

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Field Summary
private  java.util.Hashtable	bins
private  java.util.Vector	desc2ignore
private static java.lang.String	FILE_EXT
private static org.apache.log4j.Category	logger           Obtain a suitable logger.
private  int	numberOfBins
private  DescStatistic	statistic

 

Fields inherited from class joelib.process.SimpleProcess

 

Constructor Summary

DescBinning()           Constructor for the DescSelectionWriter object

 

Method Summary
boolean	clear()           Description of the Method
static boolean	existsBinningFileFor(java.lang.String fileName)           Description of the Method
boolean	fromFile(java.lang.String fileName)           Description of the Method
boolean	fromFileFor(java.lang.String fileName)
static DescBinning	getDescBinning(joelib.io.IOType inType, java.lang.String inFile)           Gets the descBinning attribute of the DescBinning class
static DescBinning	getDescBinning(joelib.io.IOType inType, java.lang.String inFile, int _numberOfBins)
static DescBinning	getDescBinning(joelib.molecule.JOEMolVector molecules)           Gets the descBinning attribute of the DescBinning class
wsi.ra.tool.ArrayBinning	getDescriptorBinning(java.lang.String descriptor)           Gets the descriptorBinning attribute of the DescBinning object
java.util.Enumeration	getDescriptors()           Gets the descriptors attribute of the DescBinning object
DescStatistic	getDescStatistic()           Gets the descStatistic attribute of the DescBinning object
void	init(DescStatistic _statistic)           Description of the Method
void	init(DescStatistic _statistic, int _numberOfBins)           Description of the Method
void	init(joelib.io.IOType inType, java.lang.String inFile)           Description of the Method
void	init(joelib.io.IOType inType, java.lang.String inFile, int _numberOfBins)           Description of the Method
joelib.util.JOEProperty[]	neededProperties()           Description of the Method
int	numberOfDescriptors()           Description of the Method
boolean	process(joelib.molecule.JOEMol mol, java.util.Map properties)           Description of the Method
java.lang.String	toString()           Description of the Method
void	writeBinningFileFor(java.lang.String _inFile)

 

Methods inherited from class joelib.process.SimpleProcess

acceptedProperties, getProcessInfo, setProcessInfo

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

 

Field Detail

logger

private static org.apache.log4j.Category logger

Obtain a suitable logger.

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FILE_EXT

private static final java.lang.String FILE_EXT

See Also:

Constant Field Values

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statistic

private DescStatistic statistic

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bins

private java.util.Hashtable bins

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desc2ignore

private java.util.Vector desc2ignore

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numberOfBins

private int numberOfBins

Constructor Detail

DescBinning

public DescBinning()

Constructor for the DescSelectionWriter object

Method Detail

getDescBinning

public static DescBinning getDescBinning(joelib.io.IOType inType,
                                         java.lang.String inFile)

Gets the descBinning attribute of the DescBinning class

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getDescBinning

public static DescBinning getDescBinning(joelib.molecule.JOEMolVector molecules)

Gets the descBinning attribute of the DescBinning class

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getDescBinning

public static DescBinning getDescBinning(joelib.io.IOType inType,
                                         java.lang.String inFile,
                                         int _numberOfBins)

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getDescStatistic

public DescStatistic getDescStatistic()

Gets the descStatistic attribute of the DescBinning object

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getDescriptorBinning

public wsi.ra.tool.ArrayBinning getDescriptorBinning(java.lang.String descriptor)

Gets the descriptorBinning attribute of the DescBinning object

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getDescriptors

public java.util.Enumeration getDescriptors()

Gets the descriptors attribute of the DescBinning object

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clear

public boolean clear()

Description of the Method

Specified by:

clear in interface joelib.process.JOEProcess

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existsBinningFileFor

public static boolean existsBinningFileFor(java.lang.String fileName)

Description of the Method

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fromFile

public boolean fromFile(java.lang.String fileName)

Description of the Method

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fromFileFor

public boolean fromFileFor(java.lang.String fileName)

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init

public void init(DescStatistic _statistic)

Description of the Method

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init

public void init(DescStatistic _statistic,
                 int _numberOfBins)

Description of the Method

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init

public void init(joelib.io.IOType inType,
                 java.lang.String inFile)
          throws java.lang.Exception

Description of the Method

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init

public void init(joelib.io.IOType inType,
                 java.lang.String inFile,
                 int _numberOfBins)
          throws java.lang.Exception

Description of the Method

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neededProperties

public joelib.util.JOEProperty[] neededProperties()

Description of the Method

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numberOfDescriptors

public int numberOfDescriptors()

Description of the Method

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process

public boolean process(joelib.molecule.JOEMol mol,
                       java.util.Map properties)
                throws joelib.process.JOEProcessException

Description of the Method

Specified by:

process in interface joelib.process.JOEProcess

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toString

public java.lang.String toString()

Description of the Method

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writeBinningFileFor

public void writeBinningFileFor(java.lang.String _inFile)

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> joelib >> process >> [ types overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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