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joelib.process.types
Class DescSelectionWriter  

java.lang.Object
  joelib.process.SimpleProcess
      joelib.process.types.DescSelectionWriter

All Implemented Interfaces:

joelib.process.JOEProcess, joelib.util.PropertyAcceptor, java.io.Serializable

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public class DescSelectionWriter

extends joelib.process.SimpleProcess

Calling processor classes if the filter rule fits.

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Field Summary
private  java.lang.String	commentString
private static int	DEFAULT_DESC_OTYPE           Description of the Field
private  java.lang.String	delimiterString
private  boolean	descNamesChecked
private  int	descOutputType
private  java.util.Vector	descriptorNames
static int	DESCRIPTORS           Description of the Field
private  boolean	firstLineWritten
private static org.apache.log4j.Category	logger           Obtain a suitable logger.
static int	MOL_AND_DESCRIPTORS           Description of the Field
private  int	molCounter
private  java.io.PrintStream	outStream
private  joelib.io.IOType	outType
private  joelib.io.MoleculeFileType	outWriter
private  int	skipCounter
private  java.io.PrintStream	skipStream
private  joelib.io.IOType	skipType
private  joelib.io.MoleculeFileType	skipWriter

 

Fields inherited from class joelib.process.SimpleProcess

 

Constructor Summary

DescSelectionWriter()           Constructor for the DescSelectionWriter object

 

Method Summary
private  void	checkDescriptorNames(joelib.molecule.JOEMol mol)           Description of the Method
boolean	clear()           Description of the Method
java.lang.String	getComment()           Gets the comment attribute of the DescSelectionWriter object
java.lang.String	getDelimiter()           Gets the delimiter attribute of the DescSelectionWriter object
void	init(java.io.OutputStream os, joelib.io.IOType _outType)           Description of the Method
void	init(java.io.OutputStream os, joelib.io.IOType _outType, java.util.Vector _descriptorNames, int _descOutputType)           Description of the Method
void	init(java.lang.String _outputFile, joelib.io.IOType _outType)           Description of the Method
void	init(java.lang.String _outputFile, joelib.io.IOType _outType, java.util.Vector _descriptorNames, int _descOutputType)           Description of the Method
joelib.util.JOEProperty[]	neededProperties()           Description of the Method
boolean	process(joelib.molecule.JOEMol mol, java.util.Map properties)           Description of the Method
void	setComment(java.lang.String _comment)           Sets the comment attribute of the DescSelectionWriter object
void	setDelimiter(java.lang.String _delimiter)           Sets the delimiter attribute of the DescSelectionWriter object
void	setSkipStream(java.io.OutputStream _skipStream, joelib.io.IOType _skipType)           Sets the skipStream attribute of the DescSelectionWriter object
private  void	writeFirstLine()           Description of the Method

 

Methods inherited from class joelib.process.SimpleProcess

acceptedProperties, getProcessInfo, setProcessInfo

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

logger

private static org.apache.log4j.Category logger

Obtain a suitable logger.

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DESCRIPTORS

public static final int DESCRIPTORS

Description of the Field

See Also:

Constant Field Values

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MOL_AND_DESCRIPTORS

public static final int MOL_AND_DESCRIPTORS

Description of the Field

See Also:

Constant Field Values

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DEFAULT_DESC_OTYPE

private static final int DEFAULT_DESC_OTYPE

Description of the Field

See Also:

Constant Field Values

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outType

private joelib.io.IOType outType

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skipType

private joelib.io.IOType skipType

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outWriter

private joelib.io.MoleculeFileType outWriter

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skipWriter

private joelib.io.MoleculeFileType skipWriter

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outStream

private java.io.PrintStream outStream

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skipStream

private java.io.PrintStream skipStream

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commentString

private java.lang.String commentString

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delimiterString

private java.lang.String delimiterString

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descriptorNames

private java.util.Vector descriptorNames

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descNamesChecked

private boolean descNamesChecked

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firstLineWritten

private boolean firstLineWritten

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descOutputType

private int descOutputType

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molCounter

private int molCounter

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skipCounter

private int skipCounter

Constructor Detail

DescSelectionWriter

public DescSelectionWriter()

Constructor for the DescSelectionWriter object

Method Detail

setComment

public void setComment(java.lang.String _comment)

Sets the comment attribute of the DescSelectionWriter object

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getComment

public java.lang.String getComment()

Gets the comment attribute of the DescSelectionWriter object

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setDelimiter

public void setDelimiter(java.lang.String _delimiter)

Sets the delimiter attribute of the DescSelectionWriter object

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getDelimiter

public java.lang.String getDelimiter()

Gets the delimiter attribute of the DescSelectionWriter object

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setSkipStream

public void setSkipStream(java.io.OutputStream _skipStream,
                          joelib.io.IOType _skipType)
                   throws java.lang.Exception

Sets the skipStream attribute of the DescSelectionWriter object

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clear

public boolean clear()

Description of the Method

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init

public void init(java.io.OutputStream os,
                 joelib.io.IOType _outType)
          throws java.lang.Exception

Description of the Method

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init

public void init(java.lang.String _outputFile,
                 joelib.io.IOType _outType)
          throws java.lang.Exception

Description of the Method

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init

public void init(java.lang.String _outputFile,
                 joelib.io.IOType _outType,
                 java.util.Vector _descriptorNames,
                 int _descOutputType)
          throws java.lang.Exception

Description of the Method

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init

public void init(java.io.OutputStream os,
                 joelib.io.IOType _outType,
                 java.util.Vector _descriptorNames,
                 int _descOutputType)
          throws java.lang.Exception

Description of the Method

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neededProperties

public joelib.util.JOEProperty[] neededProperties()

Description of the Method

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process

public boolean process(joelib.molecule.JOEMol mol,
                       java.util.Map properties)
                throws joelib.process.JOEProcessException

Description of the Method

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checkDescriptorNames

private void checkDescriptorNames(joelib.molecule.JOEMol mol)

Description of the Method

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writeFirstLine

private void writeFirstLine()
                     throws java.io.IOException

Description of the Method

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> joelib >> process >> [ types overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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