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A
- AtomArrayInt - class joelib.util.types.AtomArrayInt.
- Atom array and integer value.
- AtomArrayInt() - Constructor for class joelib.util.types.AtomArrayInt
- AtomHCount - class joelib.util.types.AtomHCount.
- Atom and number of hydrogen atoms.
- AtomHCount(JOEAtom, int) - Constructor for class joelib.util.types.AtomHCount
- Constructor for the AtomHCount object
- AtomIntInt - class joelib.util.types.AtomIntInt.
- Atom and IntInt.
- AtomIntInt(JOEAtom, IntInt) - Constructor for class joelib.util.types.AtomIntInt
- Constructor for the AtomIntInt object
- AtomZPos - class joelib.util.types.AtomZPos.
- Atom and double z value.
- AtomZPos(JOEAtom, double) - Constructor for class joelib.util.types.AtomZPos
- Constructor for the AtomZPos object
- a - Variable in class joelib.util.types.AtomIntInt
- Description of the Field
- atom - Variable in class joelib.util.types.AtomHCount
- Description of the Field
- atom - Variable in class joelib.util.types.AtomZPos
- Description of the Field
- atom - Variable in class joelib.util.types.StackType
- Description of the Field
- atoms - Variable in class joelib.util.types.AtomArrayInt
- Description of the Field
B
- BasicFactoryInfo - class joelib.util.types.BasicFactoryInfo.
- Create informations for a class which can be get by a factory class using Java reflection.
- BasicFactoryInfo(String, String, String) - Constructor for class joelib.util.types.BasicFactoryInfo
- Create informations for a class which can be get by a factory class.
- BondInt - class joelib.util.types.BondInt.
- Bond and integer value.
- BondInt(JOEBond, int) - Constructor for class joelib.util.types.BondInt
- Constructor for the BondInt object
- bond - Variable in class joelib.util.types.BondInt
- Description of the Field
- bond - Variable in class joelib.util.types.StackType
- Description of the Field
C
D
- DoubleInt - class joelib.util.types.DoubleInt.
- Double and integer value.
- DoubleInt() - Constructor for class joelib.util.types.DoubleInt
- Constructor for the IntInt object
- DoubleInt(double, int) - Constructor for class joelib.util.types.DoubleInt
- Constructor for the IntInt object
- DoubleType - class joelib.util.types.DoubleType.
- Two integers to represent a (BINARY) double value.
- DoubleType() - Constructor for class joelib.util.types.DoubleType
- d - Variable in class joelib.util.types.DoubleInt
- Description of the Field
- descriptionFile - Variable in class joelib.util.types.BasicFactoryInfo
- Base directory for the descriptorion for the class.
E
- elem - Variable in class joelib.util.types.Template
- Description of the Field
- equals(Object) - Method in class joelib.util.types.AtomZPos
- Compare this object with another object.
- equals(Object) - Method in class joelib.util.types.DoubleInt
- equals(Object) - Method in class joelib.util.types.Int
- equals(Object) - Method in class joelib.util.types.IntInt
- equals(Object) - Method in class joelib.util.types.IntIntInt
F
G
- getDescriptionFile() - Method in class joelib.util.types.BasicFactoryInfo
- Gets base directory for the descriptorion for the class.
- getName() - Method in class joelib.util.types.BasicFactoryInfo
- Gets name to access the class.
- getRepresentation() - Method in class joelib.util.types.BasicFactoryInfo
- Representation for class with package path and class name.
H
- hCount - Variable in class joelib.util.types.AtomHCount
- Description of the Field
- hi - Variable in class joelib.util.types.DoubleType
- Description of the Field
I
- Int - class joelib.util.types.Int.
- Two integer values.
- Int() - Constructor for class joelib.util.types.Int
- Constructor for the IntInt object
- Int(int) - Constructor for class joelib.util.types.Int
- Constructor for the IntInt object
- IntInt - class joelib.util.types.IntInt.
- Two integer values.
- IntInt() - Constructor for class joelib.util.types.IntInt
- Constructor for the IntInt object
- IntInt(int, int) - Constructor for class joelib.util.types.IntInt
- Constructor for the IntInt object
- IntIntInt - class joelib.util.types.IntIntInt.
- IntInt and one more integer value.
- IntIntInt() - Constructor for class joelib.util.types.IntIntInt
- Constructor for the IntIntInt object
- IntIntInt(IntInt, int) - Constructor for class joelib.util.types.IntIntInt
- Constructor for the IntIntInt object
- i - Variable in class joelib.util.types.AtomArrayInt
- Description of the Field
- i - Variable in class joelib.util.types.BondInt
- Description of the Field
- i - Variable in class joelib.util.types.DoubleInt
- Description of the Field
- i - Variable in class joelib.util.types.Int
- Description of the Field
- i - Variable in class joelib.util.types.IntIntInt
- Description of the Field
- i - Variable in class joelib.util.types.StringInt
- Description of the Field
- i1 - Variable in class joelib.util.types.IntInt
- Description of the Field
- i2 - Variable in class joelib.util.types.IntInt
- Description of the Field
- ii - Variable in class joelib.util.types.AtomIntInt
- Description of the Field
- ii - Variable in class joelib.util.types.IntIntInt
- Description of the Field
J
- JOEInternalCoord - class joelib.util.types.JOEInternalCoord.
- Internal coordinates for three atoms.
- JOEInternalCoord() - Constructor for class joelib.util.types.JOEInternalCoord
- JOEInternalCoord(JOEAtom, JOEAtom, JOEAtom) - Constructor for class joelib.util.types.JOEInternalCoord
- joelib.util.types - package joelib.util.types
- Provides all kind of additional technical/molecular helper classes.
L
- lo - Variable in class joelib.util.types.DoubleType
- Description of the Field
N
- n1 - Variable in class joelib.util.types.Template
- Description of the Field
- n2 - Variable in class joelib.util.types.Template
- Description of the Field
- n3 - Variable in class joelib.util.types.Template
- Description of the Field
- n4 - Variable in class joelib.util.types.Template
- Description of the Field
- name - Variable in class joelib.util.types.BasicFactoryInfo
- Name to access the class.
O
- o - Variable in class joelib.util.types.StringObject
- Description of the Field
P
- p - Variable in class joelib.util.types.StringPattern
- Description of the Field
- prev - Variable in class joelib.util.types.StackType
- Description of the Field
R
- representation - Variable in class joelib.util.types.BasicFactoryInfo
- Representation for class with package path and class name.
S
- StackType - class joelib.util.types.StackType.
- Atom, bond and integer.
- StackType() - Constructor for class joelib.util.types.StackType
- StringInt - class joelib.util.types.StringInt.
- String and integer value.
- StringInt(String, int) - Constructor for class joelib.util.types.StringInt
- Constructor for the StringString object
- StringObject - class joelib.util.types.StringObject.
- Two String values.
- StringObject(String, Object) - Constructor for class joelib.util.types.StringObject
- Constructor for the StringString object
- StringPattern - class joelib.util.types.StringPattern.
- java.lang.String and regular expression java.util.regex.Pattern.
- StringPattern(String, Pattern) - Constructor for class joelib.util.types.StringPattern
- Constructor for the StringString object
- StringString - class joelib.util.types.StringString.
- Two String values.
- StringString(String, String) - Constructor for class joelib.util.types.StringString
- Constructor for the StringString object
- s - Variable in class joelib.util.types.StringInt
- Description of the Field
- s - Variable in class joelib.util.types.StringObject
- Description of the Field
- s - Variable in class joelib.util.types.StringPattern
- Description of the Field
- s1 - Variable in class joelib.util.types.StringString
- Description of the Field
- s2 - Variable in class joelib.util.types.StringString
- Description of the Field
- setDescriptionFile(String) - Method in class joelib.util.types.BasicFactoryInfo
- Sets base directory for the descriptorion for the class.
- setName(String) - Method in class joelib.util.types.BasicFactoryInfo
- setRepresentation(String) - Method in class joelib.util.types.BasicFactoryInfo
T
- Template - class joelib.util.types.Template.
- Template values.
- Template() - Constructor for class joelib.util.types.Template
- toString() - Method in class joelib.util.types.BasicFactoryInfo
- Gets informations for a class which can be get by a factory class.
- toString() - Method in class joelib.util.types.Int
- toString() - Method in class joelib.util.types.IntInt
- toString() - Method in class joelib.util.types.StringString
Z
_
- _a - Variable in class joelib.util.types.JOEInternalCoord
- _ang - Variable in class joelib.util.types.JOEInternalCoord
- _b - Variable in class joelib.util.types.JOEInternalCoord
- _c - Variable in class joelib.util.types.JOEInternalCoord
- _dst - Variable in class joelib.util.types.JOEInternalCoord
- _tor - Variable in class joelib.util.types.JOEInternalCoord
A B C D E F G H I J L N O P R S T Z _
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