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A
- actionPerformed(ActionEvent) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.BrowseListener
- addBoundaryChar(char) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
- addConflictMessage(JDBCDataAdapter.ConflictException) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter.ConflictException
- addConflictMessage(PostgresDataAdapter.ConflictException) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.ConflictException
- addDbxref(Statement, Term, TermTextHistoryItem.DbxrefEdit, int) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- addDbxref(Statement, Term, TermTextHistoryItem.DbxrefEdit, int, int, int, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- addException(GOFlatFileParseException) - Method in class org.bdgp.apps.dagedit.dataadapter.CompoundGOFlatFileParseException
- addKeeperTokenChar(char) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
- addOrModifyProfile() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- addPath(String) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- addProgressListener(ProgressListener) - Method in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- addTokenChar(char) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
- advancedButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- advancedButton - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- advancedDialog - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- allTerms - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.InteractiveDatabaseHistory
- allowCycles - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- allowCycles - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- allowCyclesBox - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- allowDangling - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- allowDangling - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- allowDanglingBox - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- allterms_hash - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- allterms_hash - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.DynamicMacroHistoryItem
- allterms_hash - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- attachListeners() - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- attachListeners() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
B
- BOUNDARY_CHAR - Static variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- boundaryChars - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
- browse(JComboBox) - Method in class org.bdgp.apps.dagedit.dataadapter.GORDFGUI
- browseButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FilenameEditor
- browseButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GORDFGUI
- browseButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GOSerialGUI
- browseButton - Variable in class org.bdgp.apps.dagedit.dataadapter.SingleFileGUI
- browseDefButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- buildCatList(Statement) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- buildCatList(Statement) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- buildConstants() - Static method in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- buildIDHash(Statement, Term) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- buildIDHash(Statement, Term) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- buildImpliedDeletes(Term, Vector, Vector) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- buildImpliedDeletes(Term, Vector, Vector) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- buildRelTypeList(Statement) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- buildRelTypeList(Statement) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
C
- CONFIGURE - Static variable in interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI
- CompoundGOFlatFileParseException - class org.bdgp.apps.dagedit.dataadapter.CompoundGOFlatFileParseException.
- CompoundGOFlatFileParseException(boolean) - Constructor for class org.bdgp.apps.dagedit.dataadapter.CompoundGOFlatFileParseException
- CompoundGOFlatFileParseException() - Constructor for class org.bdgp.apps.dagedit.dataadapter.CompoundGOFlatFileParseException
- cancel() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- cancelButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- cancelButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GORDFGUI
- cancelButton - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- cancelButton - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- catHash - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- catHash - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- catList - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- catList - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- categories - Static variable in class org.bdgp.apps.dagedit.dataadapter.DefaultIDAdapter
- categories - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- categories - Static variable in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- changePassword() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- changePassword(String) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- charField - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeEditor
- charToType - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- checkConflicts(DEEditHistory, Term) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- Checks to see if two GO trees are in conflict
- checkConflicts(DEEditHistory, Term) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- Checks to see if two GO trees are in conflict
- checkParentage(Hashtable, Vector, URL) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- checkSameRelationships(Term, Term) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- childID - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.ParentageHolder
- clearDatabase(Statement) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- clearDatabase(Statement) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- colLoc - Variable in class org.bdgp.apps.dagedit.dataadapter.GOToken
- colNumber - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.ParentageHolder
- colNumber - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileParseException
- collectParams() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- collectParams() - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- collectParams() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- comment - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- comment - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- comment - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- comment - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- commentField - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- commentField - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- commentField - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- commentLabel - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- commentLabel - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- commentPane - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- commit() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- commit() - Method in class org.bdgp.apps.dagedit.dataadapter.GOSerialGUI
- commit() - Method in class org.bdgp.apps.dagedit.dataadapter.SingleFileGUI
- commitAdvancedChanges() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- commitButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- commitButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GORDFGUI
- commitButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GOSerialGUI
- commitButton - Variable in class org.bdgp.apps.dagedit.dataadapter.SingleFileGUI
- compare(Object, Object) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.DanglingSorter
- compare(Object, Object) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.TermByDefComparator
- compareTo(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FileProfile
- compareTo(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.RefHolder
- compareTo(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.RelationshipHolder
- compareTo(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.SynonymHolder
- conflictMessages - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter.ConflictException
- conflictMessages - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.ConflictException
- connectionLabel - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- contains(Term, Term) - Static method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- contains(Term, Term, Hashtable) - Static method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- controller - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- controller - Variable in class org.bdgp.apps.dagedit.dataadapter.GORDFGUI
- controller - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- controllingObject - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI.Committer
- convertType(int) - Static method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- convertType(String) - Static method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- countLeadingSpaces(String) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- createNewValue() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FilenameEditor
- createNewValue() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeEditor
- currentProfile - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- currentRoot - Variable in class org.bdgp.apps.dagedit.dataadapter.DefaultIDAdapter
- currentSelectedIndex - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- currentToken - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
- currentType - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- currentloc - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
D
- DB_PROPERTY - Static variable in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- DEDataAdapterI - interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI.
- DEF_PROPERTY - Static variable in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- DEVELOPS_FROM - Static variable in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- DefaultIDAdapter - class org.bdgp.apps.dagedit.dataadapter.DefaultIDAdapter.
- DefaultIDAdapter() - Constructor for class org.bdgp.apps.dagedit.dataadapter.DefaultIDAdapter
- danglingSorter - Static variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- databaseIDHash - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- databaseIDHash - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- dateFormat - Static variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- def - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.DefHolder
- defFile - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FileProfile
- defFileName - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- defFilename - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- defaultBox - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeEditor
- defaultBrowsePath - Variable in class org.bdgp.apps.dagedit.dataadapter.SingleFileGUI
- defaultType - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- defaultType - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- defaultType - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- definitionField - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- definitionLabel - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- delButton - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- delegateToIDAdapter(DEDataAdapterI) - Method in interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI
- delegateToIDAdapter(DEDataAdapterI) - Method in class org.bdgp.apps.dagedit.dataadapter.DefaultIDAdapter
- delegateToIDAdapter(DEDataAdapterI) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- delegateToIDAdapter(DEDataAdapterI) - Method in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- delegateToIDAdapter(DEDataAdapterI) - Method in class org.bdgp.apps.dagedit.dataadapter.GOSerialAdapter
- delegateToIDAdapter(DEDataAdapterI) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- delegateToIDAdapter(DEDataAdapterI) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- deleteDbxref(Statement, Term, TermTextHistoryItem.DbxrefEdit, int) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- deleteDbxref(Statement, Term, TermTextHistoryItem.DbxrefEdit, int, int, int, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- deleteProfile() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- desc - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeWrapper
- desc - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.OperationWrapper
- descField - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeEditor
- discardParentageTokens(GOToken, String, Queue) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- displayDatabaseInfo() - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- doCleanup(Connection) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- doOperation(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- doOperation(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.GORDFGUI
- doOperation(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.GOSerialGUI
- doOperation(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI.ErrorUI
- doOperation(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- doOperation(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI.ErrorUI
- doOperation(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- doOperation(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.SingleFileGUI
- driver - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- driver - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- driver - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- driver - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- driver - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- driverField - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- driverField - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- driverLabel - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI
- driverLabel - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- driverLoaded - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- driverLoaded - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
E
- EXPORT_TERMS - Static variable in interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI
- editor - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FilenameEditor
- editor - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeEditor
- empty - Variable in class org.bdgp.apps.dagedit.dataadapter.CompoundGOFlatFileParseException
- encodeFileProfile(GOFlatFileGUI.FileProfile, int, Properties) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- equals(Object) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.ConflictException
- escape(String) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- escapeChar - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
- escapeDefText(String) - Static method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- escapeString(String) - Method in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- exceptionHolder - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- exceptions - Variable in class org.bdgp.apps.dagedit.dataadapter.CompoundGOFlatFileParseException
- exportTerms(Term, Vector, TermRelationshipType, boolean) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- exportTerms(DEEditHistory, boolean) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- extraLabel - Variable in class org.bdgp.apps.dagedit.dataadapter.JDBCAdapterGUI.ErrorUI
- extraLabel - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI.ErrorUI
- extractDate(String) - Static method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
F
- FAILED_TYPE - Static variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- FIND_PRODUCTS - Static variable in interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI
- field - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.BrowseListener
- fileList - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- fileList - Variable in class org.bdgp.apps.dagedit.dataadapter.SingleFileGUI
- fileNameField - Variable in class org.bdgp.apps.dagedit.dataadapter.GORDFGUI
- fileNames - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- filePath - Variable in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- filename - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileParseException
- filename - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
- filename - Variable in class org.bdgp.apps.dagedit.dataadapter.GOToken
- filenameField - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FilenameEditor
- filenameField - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- filenames - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- filenames - Variable in class org.bdgp.apps.dagedit.dataadapter.GORDFGUI
- files - Variable in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FileProfile
- findStartOfDefFieldData(String) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- findTermInHash(Term, Hashtable) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- flush - Variable in class org.bdgp.apps.dagedit.dataadapter.GOToken
- forceHistory - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- forceHistory - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- forceHistoryCheckbox - Variable in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- formatConflictMessage() - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter.ConflictException
- formatConflictMessage(int) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter.ConflictException
- formatConflictMessage() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.ConflictException
- formatConflictMessage(int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.ConflictException
- formatString(String) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- formatString(String) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- formatSynonym(Synonym) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- formatSynonymForID(Synonym) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
G
- GET_HISTORY - Static variable in interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI
- GET_ID - Static variable in interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI
- GOFlatFileAdapter - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.
- GOFlatFileAdapter() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- GOFlatFileAdapter.DanglingSorter - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.DanglingSorter.
- GOFlatFileAdapter.DanglingSorter() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.DanglingSorter
- GOFlatFileAdapter.DefHolder - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.DefHolder.
- GOFlatFileAdapter.DefHolder() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.DefHolder
- GOFlatFileAdapter.IDWrapper - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.IDWrapper.
- GOFlatFileAdapter.IDWrapper(String, String) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.IDWrapper
- GOFlatFileAdapter.ParentageHolder - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.ParentageHolder.
- GOFlatFileAdapter.ParentageHolder() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.ParentageHolder
- GOFlatFileAdapter.TermByDefComparator - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.TermByDefComparator.
- GOFlatFileAdapter.TermByDefComparator() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.TermByDefComparator
- GOFlatFileGUI - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.
- GOFlatFileGUI(IOOperation) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- GOFlatFileGUI.BrowseListener - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.BrowseListener.
- GOFlatFileGUI.BrowseListener(JTextField) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.BrowseListener
- GOFlatFileGUI.FileProfile - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FileProfile.
- GOFlatFileGUI.FileProfile(Vector, String, String) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FileProfile
- GOFlatFileGUI.FilenameEditor - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FilenameEditor.
- GOFlatFileGUI.FilenameEditor() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FilenameEditor
- GOFlatFileGUI.RelationshipTypeEditor - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeEditor.
- GOFlatFileGUI.RelationshipTypeEditor() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeEditor
- GOFlatFileGUI.RelationshipTypeWrapper - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeWrapper.
- GOFlatFileGUI.RelationshipTypeWrapper(String, String, String, boolean) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeWrapper
- GOFlatFileParseException - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileParseException.
- GOFlatFileParseException(String) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileParseException
- GOFlatFileParseException(String, String, String, int, int) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileParseException
- GOFlatFileParseException(String, URL, String, int, int) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileParseException
- GOFlatFileTokenizer - class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer.
- GOFlatFileTokenizer(URL, String, int) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
- GOFlatFileTokenizer(String, String, int) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOFlatFileTokenizer
- GORDFAdapter - class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter.
- GORDFAdapter() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- GORDFAdapter.ParentWrapper - class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter.ParentWrapper.
- GORDFAdapter.ParentWrapper(Resource, TermRelationshipType) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter.ParentWrapper
- GORDFAdapter.ProgressMeter - class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter.ProgressMeter.
- GORDFAdapter.ProgressMeter() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter.ProgressMeter
- GORDFGUI - class org.bdgp.apps.dagedit.dataadapter.GORDFGUI.
- GORDFGUI(IOOperation) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GORDFGUI
- GOSerialAdapter - class org.bdgp.apps.dagedit.dataadapter.GOSerialAdapter.
- GOSerialAdapter() - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOSerialAdapter
- GOSerialGUI - class org.bdgp.apps.dagedit.dataadapter.GOSerialGUI.
- GOSerialGUI(IOOperation) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOSerialGUI
- GOToken - class org.bdgp.apps.dagedit.dataadapter.GOToken.
- GOToken(String, String, String, int, int, boolean) - Constructor for class org.bdgp.apps.dagedit.dataadapter.GOToken
- getAdvancedPanel(JPanel) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI
- getAdvancedPanel(JPanel) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- getAllTerms() - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- getAllTerms() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getAllowCycles() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getAllowDangling() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getCategoryIndex(Statement) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- getCategoryIndex(Statement) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getChanges() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.DynamicTermTextHistoryItem
- getCharForRelationship(TermRelationshipType) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getCharForRelationship(TermRelationship) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getChildConflicts(Term, Term) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getColNumber() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileParseException
- getColNumber() - Method in class org.bdgp.apps.dagedit.dataadapter.GOToken
- getConflictMessages() - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter.ConflictException
- getConflictMessages() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.ConflictException
- getConnection() - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- getConnection() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getDatabaseIDForTerm(Statement, Term) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- getDatabaseIDForTerm(Statement, Term) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getDbxrefEditAt(int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.DynamicDefinitionEdit
- getDbxrefEditAt(int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.DynamicSynonymEdit
- getDbxrefEditCount() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.DynamicDefinitionEdit
- getDbxrefEditCount() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.DynamicSynonymEdit
- getDbxrefString(Term) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getDefFile() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FileProfile
- getDefaultTermRelationship() - Static method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getDefaultType() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getDefaultTypeBindings() - Static method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getDesc() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeWrapper
- getFilename() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileParseException
- getFilename() - Method in class org.bdgp.apps.dagedit.dataadapter.GOToken
- getFiles() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.FileProfile
- getHistories() - Method in interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI
- getHistories() - Method in class org.bdgp.apps.dagedit.dataadapter.DefaultIDAdapter
- getHistories() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getHistories() - Method in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- getHistories() - Method in class org.bdgp.apps.dagedit.dataadapter.GOSerialAdapter
- getHistories() - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- getHistories() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getHistoryItem(JDBCDataAdapter.OperationWrapper) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- getHistoryItem(PostgresDataAdapter.OperationWrapper, Statement, Hashtable, int, int, int) - Static method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getHistoryItemAt(int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.DynamicMacroHistoryItem
- getHistoryItemCount() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.DynamicMacroHistoryItem
- getHistoryItemForID(Statement, Hashtable, int, int, int) - Static method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getHistoryItems() - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.InteractiveDatabaseHistory
- getID() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter.IDWrapper
- getIDs(Term, Term, String, int, int) - Method in interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI
- getIDs(Term, Term, String, int, int, int, int) - Method in interface org.bdgp.apps.dagedit.dataadapter.DEDataAdapterI
- getIDs(Term, Term, String, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.DefaultIDAdapter
- getIDs(Term, Term, String, int, int, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.DefaultIDAdapter
- getIDs(Term, Term, String, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getIDs(Term, Term, String, int, int, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileAdapter
- getIDs(Term, Term, String, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- getIDs(Term, Term, String, int, int, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.GORDFAdapter
- getIDs(Term, Term, String, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.GOSerialAdapter
- getIDs(Term, Term, String, int, int, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.GOSerialAdapter
- getIDs(Term, Term, String, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- getIDs(Term, Term, String, int, int, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- getIDs(Term, Term, String, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getIDs(Term, Term, String, int, int, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getIntForType(TermRelationshipType) - Method in class org.bdgp.apps.dagedit.dataadapter.JDBCDataAdapter
- getIntForType(TermRelationshipType) - Static method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getInteger(ResultSet, String) - Static method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter
- getIsDefault() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileGUI.RelationshipTypeWrapper
- getItemAt(int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresDataAdapter.InteractiveDatabaseHistory
- getLabeledBox(JLabel, JComponent, int, int, int) - Method in class org.bdgp.apps.dagedit.dataadapter.PostgresAdapterGUI
- getLine() - Method in class org.bdgp.apps.dagedit.dataadapter.GOFlatFileParseException
- getLine() - Method in class org.bdgp.apps.dagedit.dataadapter.GOToken
- getLineNumber() - Method in class org.