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A

ANALOG - Static variable in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
ANATOMICAL - Static variable in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
add(TreePath) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
addCategory(TermCategory) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
addChild(Term, TermRelationshipType) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
addChild(TermRelationship) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
addChild(TreePath, Object) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
addDanglingParent(DanglingRelationship) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
addDbxref(Dbxref) - Method in class org.bdgp.apps.dagedit.datamodel.Synonym
 
addDbxref(Dbxref) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
addDbxref(String, String, String, int) - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem
 
addDefDbxref(Dbxref) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
addHistoryItem(HistoryItem) - Method in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
addItem(HistoryItem) - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
addParent(Term, TermRelationshipType) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
addParent(TermRelationship) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
addRelationshipType(TermRelationshipType) - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
addSynonym(Synonym) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
addSynonym(Synonym) - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem
 
addTreeModelListener(TreeModelListener) - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
addTreeModelListener(TreeModelListener) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
autoID - Static variable in class org.bdgp.apps.dagedit.datamodel.Term
 

B

belongsToCategory(TermCategory) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 

C

categories - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
categoryName - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.CategoryEdit
 
changeTermRelationship(TreePath[], TermRelationshipType) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
changes - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem
 
child - Variable in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
children - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
clone() - Method in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
clone() - Method in class org.bdgp.apps.dagedit.datamodel.Synonym
 
clone() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
clone() - Method in class org.bdgp.apps.dagedit.datamodel.TermCategory
 
clone() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
cloneParentTree(Term) - Static method in class org.bdgp.apps.dagedit.datamodel.Term
Creates a clone of all the nodes down to term.
cloneSubtree(Term) - Static method in class org.bdgp.apps.dagedit.datamodel.Term
 
comment - Variable in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
comment - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
compare(Object, Object) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel.CaseInsensitiveTermSorter
 
compare(Object, Object) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel.CaseSensitiveTermSorter
 
compareTo(Object) - Method in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
compareTo(Object) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
condense(Object, Object) - Method in class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser.TextHistoryCondenser
 
condense(Object, Object) - Method in class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser
 
condenseItems(TermTextHistoryItem.DefinitionEdit, TermTextHistoryItem.DefinitionEdit) - Method in class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser.TextHistoryCondenser
 
condenseItems(TermTextHistoryItem.CategoryEdit, TermTextHistoryItem.CategoryEdit) - Method in class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser.TextHistoryCondenser
 
condenseItems(TermTextHistoryItem.SynonymEdit, TermTextHistoryItem.SynonymEdit) - Method in class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser.TextHistoryCondenser
 
condenseItems(TermTextHistoryItem.DbxrefEdit, TermTextHistoryItem.DbxrefEdit) - Method in class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser.TextHistoryCondenser
 
condenseItems(TermRelationshipHistoryItem, TermRelationshipHistoryItem) - Method in class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser
 
condenseItems(TermTextHistoryItem, TermTextHistoryItem) - Method in class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser
 
condenseItems(TermMoveHistoryItem, TermMoveHistoryItem) - Method in class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser
 
controller - Variable in class org.bdgp.apps.dagedit.datamodel.DEEdit
 
controller - Variable in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
controller - Variable in class org.bdgp.apps.dagedit.datamodel.TermModel
 
copy(TreePath[], TreePath) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 

D

DEEdit - class org.bdgp.apps.dagedit.datamodel.DEEdit.
 
DEEdit(String, Controller) - Constructor for class org.bdgp.apps.dagedit.datamodel.DEEdit
 
DEEditHistory - class org.bdgp.apps.dagedit.datamodel.DEEditHistory.
 
DEEditHistory(Term) - Constructor for class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
DEEditHistory(Term, boolean) - Constructor for class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
DEFINITION - Static variable in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
DanglingRelationship - class org.bdgp.apps.dagedit.datamodel.DanglingRelationship.
 
DanglingRelationship(String, String, TermRelationshipType) - Constructor for class org.bdgp.apps.dagedit.datamodel.DanglingRelationship
 
Dbxref - class org.bdgp.apps.dagedit.datamodel.Dbxref.
 
Dbxref(String, String) - Constructor for class org.bdgp.apps.dagedit.datamodel.Dbxref
 
Dbxref(String, String, int) - Constructor for class org.bdgp.apps.dagedit.datamodel.Dbxref
 
Dbxref(String, String, String, int) - Constructor for class org.bdgp.apps.dagedit.datamodel.Dbxref
 
Dbxref(String, String, String, int, Synonym) - Constructor for class org.bdgp.apps.dagedit.datamodel.Dbxref
 
DefaultHistoryCondenser - class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser.
 
DefaultHistoryCondenser() - Constructor for class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser
 
DefaultHistoryCondenser.TextHistoryCondenser - class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser.TextHistoryCondenser.
 
DefaultHistoryCondenser.TextHistoryCondenser() - Constructor for class org.bdgp.apps.dagedit.datamodel.DefaultHistoryCondenser.TextHistoryCondenser
 
danglingParents - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
database - Variable in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
database - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
date - Variable in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
dbxrefChanges - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
dbxrefEdits - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
debug - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
defReferences - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
defaultRelationshipType - Variable in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
definition - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
delete(TreePath[]) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
depth - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
desc - Variable in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
desc - Variable in class org.bdgp.apps.dagedit.datamodel.TermCategory
 
desc - Variable in class org.bdgp.apps.dagedit.datamodel.TermRelationshipType
 
desc - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
description - Variable in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 

E

equals(Object) - Method in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
equals(Object) - Method in class org.bdgp.apps.dagedit.datamodel.Synonym
 
equals(Term) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
equals(Object) - Method in class org.bdgp.apps.dagedit.datamodel.TermCategory
 
equals(Object, Object) - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
equals(Object) - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
equals(Object) - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationshipType
 

F

fireTreeStructureChanged(TreeModelEvent) - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
fireTreeStructureChanged(TreeModelEvent) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
flush() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
formatID(String, int, int) - Static method in class org.bdgp.apps.dagedit.datamodel.Term
 
formatID(String, String, int) - Static method in class org.bdgp.apps.dagedit.datamodel.Term
 

G

getActiveHistoryPath() - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
getAllAncestors() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getAllAncestors(boolean) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getAllAncestorsHash() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getAllAncestorsHash(boolean) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getAllDescendants() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getAllDescendants(boolean) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getAllDescendants(boolean) - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
getAllDescendantsHash() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getAllDescendantsHash(boolean) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getCategories() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getCategoryName() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.CategoryEdit
 
getChangeListForTerms(Hashtable, TermRelationshipType, Term, Term) - Static method in class org.bdgp.apps.dagedit.datamodel.HistoryGenerator
 
getChanges() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem
 
getChanges(Term, Term, boolean) - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem
 
getChild(Object, int) - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
getChild() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
getChildCount(Object) - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
getChildren() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getComment() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getComment() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getDB() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getDanglingParents() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getDatabase() - Method in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
getDate() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getDbxrefChanges(Vector, Vector, boolean) - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem
 
getDbxrefEditAt(int) - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
getDbxrefEditAt(int) - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
getDbxrefEditCount() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
getDbxrefEditCount() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
getDbxrefEdits() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
getDbxrefEdits() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
getDbxrefs() - Method in class org.bdgp.apps.dagedit.datamodel.Synonym
 
getDbxrefs() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getDefDbxrefs() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getDefaultRelationshipType() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getDefinition() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getDeletedRelationships() - Method in class org.bdgp.apps.dagedit.datamodel.TermDeleteHistoryItem
 
getDesc() - Method in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
getDesc() - Method in class org.bdgp.apps.dagedit.datamodel.TermCategory
 
getDesc() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationshipType
 
getDesc() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getDescription() - Method in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
getHistory(Term, Term, TermRelationshipType) - Static method in class org.bdgp.apps.dagedit.datamodel.HistoryGenerator
 
getHistory(Term, Term, TermRelationshipType, ProgressListener) - Static method in class org.bdgp.apps.dagedit.datamodel.HistoryGenerator
 
getHistoryItemAt(int) - Method in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
getHistoryItemCount() - Method in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
getHistoryItems() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getHistoryList() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getID() - Method in class org.bdgp.apps.dagedit.datamodel.DanglingRelationship
 
getID() - Method in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
getID() - Method in class org.bdgp.apps.dagedit.datamodel.Synonym
 
getID() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getID() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getID() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
getIDPrefix() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getIDSuffix() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getImportedTerm() - Method in class org.bdgp.apps.dagedit.datamodel.TermImportHistoryItem
 
getIndexOfChild(Object, Object) - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
getIndexOfParent(Object, Object) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
getIsActive() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getItemAt(int) - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getMaster() - Method in class org.bdgp.apps.dagedit.datamodel.TermMergeHistoryItem
 
getMovedRelationships() - Method in class org.bdgp.apps.dagedit.datamodel.TermMoveHistoryItem
 
getNSpaces(int) - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
getName() - Method in class org.bdgp.apps.dagedit.datamodel.DanglingRelationship
 
getName() - Method in class org.bdgp.apps.dagedit.datamodel.TermCategory
 
getName() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationshipType
 
getName() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
getNewDB() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getNewDesc() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getNewID() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getNewID() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
getNewName() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
getNewText() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.CommentEdit
 
getNewText() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
getNewText() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.TextEdit
 
getNewType() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getNewTypeString() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getOriginalMaster() - Method in class org.bdgp.apps.dagedit.datamodel.TermMergeHistoryItem
 
getOriginalResult() - Method in class org.bdgp.apps.dagedit.datamodel.TermCommitAndObsoleteHistoryItem
 
getOriginalResult() - Method in class org.bdgp.apps.dagedit.datamodel.TermSplitHistoryItem
 
getOriginalRoot() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getOriginalSlave() - Method in class org.bdgp.apps.dagedit.datamodel.TermMergeHistoryItem
 
getParent(Object, int) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
getParent() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
getParentCount(Object) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
getParents() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getPaths() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getPaths() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
getPathsAsVector() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getPathsAsVector() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
getPathsAsVector(int, Hashtable) - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
getProductCount() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getRelationshipType() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationshipHistoryItem
 
getRelationshipTypes() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getRelationships() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationshipHistoryItem
 
getRelationshipsForChild(Term) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getRelationshipsToParent(Term) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getReloadListener() - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
getResult() - Method in class org.bdgp.apps.dagedit.datamodel.TermAddHistoryItem
 
getResult() - Method in class org.bdgp.apps.dagedit.datamodel.TermCommitAndObsoleteHistoryItem
 
getResult() - Method in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
getResult() - Method in class org.bdgp.apps.dagedit.datamodel.TermSplitHistoryItem
 
getRoot() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getRoot() - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
getRoot() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getSlave() - Method in class org.bdgp.apps.dagedit.datamodel.TermMergeHistoryItem
 
getSources() - Method in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
getSynonyms() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getTarget() - Method in class org.bdgp.apps.dagedit.datamodel.HistoryItem
 
getTerm() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
getTerms() - Method in class org.bdgp.apps.dagedit.datamodel.TermCopyHistoryItem
Returns the terms that were copied in this operation
getText() - Method in class org.bdgp.apps.dagedit.datamodel.Synonym
 
getText() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.CommentEdit
 
getText() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
getText() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.TextEdit
 
getTextEdits() - Method in class org.bdgp.apps.dagedit.datamodel.TermMergeHistoryItem
 
getTitle() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.HistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermAddHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermCommitAndObsoleteHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermCopyHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermDeleteHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermImportHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermMergeHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermMoveHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermRebuildHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationshipHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermSplitHistoryItem
 
getTouchedNodes() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem
 
getType() - Method in class org.bdgp.apps.dagedit.datamodel.DanglingRelationship
 
getType() - Method in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
getType() - Method in class org.bdgp.apps.dagedit.datamodel.HistoryItem
 
getType() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
getType() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getTypeString() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
getTypeStringFromInt(int) - Static method in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
getUniqueChildNodesHash(Hashtable, Term) - Static method in class org.bdgp.apps.dagedit.datamodel.Term
 
getUniqueChildNodesHash(Hashtable, TermRelationship) - Static method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
getUniqueParentNodesHash(Hashtable, Term) - Static method in class org.bdgp.apps.dagedit.datamodel.Term
 
getUser() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
getVersion() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 

H

HistoryGenerator - class org.bdgp.apps.dagedit.datamodel.HistoryGenerator.
 
HistoryGenerator() - Constructor for class org.bdgp.apps.dagedit.datamodel.HistoryGenerator
 
HistoryItem - class org.bdgp.apps.dagedit.datamodel.HistoryItem.
 
HistoryItem() - Constructor for class org.bdgp.apps.dagedit.datamodel.HistoryItem
 
HistoryTreeModel - class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel.
 
HistoryTreeModel(DEEditHistory, Controller) - Constructor for class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
HistoryTreeModel(Vector, Controller) - Constructor for class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
HistoryTreeModel(Vector, Controller, boolean) - Constructor for class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
hasAncestor(Term) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
hasAncestor(Term, HashSet) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
hashCode() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
hashCode() - Method in class org.bdgp.apps.dagedit.datamodel.TermCategory
 
hashCode() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
hashCode() - Method in class org.bdgp.apps.dagedit.datamodel.TermRelationshipType
 
histories - Variable in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
historyItems - Variable in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
historyList - Variable in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 

I

id - Variable in class org.bdgp.apps.dagedit.datamodel.DanglingRelationship
 
id - Variable in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
id - Variable in class org.bdgp.apps.dagedit.datamodel.Synonym
 
id - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
id - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
id - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
idPrefix - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
idgen - Static variable in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
idgen - Static variable in class org.bdgp.apps.dagedit.datamodel.Synonym
 
idgen - Static variable in class org.bdgp.apps.dagedit.datamodel.Term
 
importedTerm - Variable in class org.bdgp.apps.dagedit.datamodel.TermImportHistoryItem
 
indexOfItem(HistoryItem) - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
intid - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
isActive - Variable in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
isAdd - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
isAdd() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
isAdd() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
isAdd - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
isAdd() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
isDel - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.CategoryEdit
 
isDel() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.CategoryEdit
 
isDel - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
isDel() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
isDel() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
isDel - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
isDel() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
isEdit() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
isEdit() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
isEdit() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
isEmpty() - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem
 
isLeaf(Object) - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
isModified() - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
isNextEdit(TermTextHistoryItem.CategoryEdit) - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.CategoryEdit
 
isNextEdit(TermTextHistoryItem.DbxrefEdit) - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
isNextEdit(TermTextHistoryItem.SynonymEdit) - Method in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
isNonTriviallyObsolete() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
isNonTriviallyObsolete(Hashtable) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
isObsolete() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
isRoot() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
item - Variable in class org.bdgp.apps.dagedit.datamodel.DEEdit
 

L

listeners - Variable in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
listeners - Variable in class org.bdgp.apps.dagedit.datamodel.TermModel
 
lookedAt - Static variable in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 

M

MACRO - Static variable in class org.bdgp.apps.dagedit.datamodel.HistoryItem
 
merge(TreePath, TreePath) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
move(TreePath[], TreePath) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 

N

name - Variable in class org.bdgp.apps.dagedit.datamodel.DanglingRelationship
 
name - Variable in class org.bdgp.apps.dagedit.datamodel.TermCategory
 
name - Variable in class org.bdgp.apps.dagedit.datamodel.TermRelationshipType
 
name - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
newDatabase - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
newDesc - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
newID - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
newId - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 
newName - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.SynonymEdit
 
newSelection - Variable in class org.bdgp.apps.dagedit.datamodel.DEEdit
 
newText - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.CommentEdit
 
newText - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
newText - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.TextEdit
 
newType - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DbxrefEdit
 

O

oldSelection - Variable in class org.bdgp.apps.dagedit.datamodel.DEEdit
 
oldText - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.CommentEdit
 
oldText - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.DefinitionEdit
 
oldText - Variable in class org.bdgp.apps.dagedit.datamodel.TermTextHistoryItem.TextEdit
 
org.bdgp.apps.dagedit.datamodel - package org.bdgp.apps.dagedit.datamodel
 
originalMasterNode - Variable in class org.bdgp.apps.dagedit.datamodel.TermMergeHistoryItem
 
originalResult - Variable in class org.bdgp.apps.dagedit.datamodel.TermCommitAndObsoleteHistoryItem
 
originalResult - Variable in class org.bdgp.apps.dagedit.datamodel.TermSplitHistoryItem
 
originalRoot - Variable in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
originalSlaveNode - Variable in class org.bdgp.apps.dagedit.datamodel.TermMergeHistoryItem
 
originalTarget - Variable in class org.bdgp.apps.dagedit.datamodel.TermSplitHistoryItem
 

P

parent - Variable in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
parents - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
pathIsCircular(TreePath) - Static method in class org.bdgp.apps.dagedit.datamodel.TermRelationship
 
populateModel() - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
populateModel(TermRelationship) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
privateid - Variable in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
privateid - Variable in class org.bdgp.apps.dagedit.datamodel.Synonym
 
productCount - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 

R

REL_CHANGE - Static variable in class org.bdgp.apps.dagedit.datamodel.HistoryItem
 
redo() - Method in class org.bdgp.apps.dagedit.datamodel.DEEdit
 
references - Variable in class org.bdgp.apps.dagedit.datamodel.Synonym
 
references - Variable in class org.bdgp.apps.dagedit.datamodel.Term
 
relType - Variable in class org.bdgp.apps.dagedit.datamodel.TermRelationshipHistoryItem
 
relationshipTypes - Variable in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
reload() - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
reloadActiveHistory() - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
reloadAndFire() - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
reloadListener - Variable in class org.bdgp.apps.dagedit.datamodel.TermModel
 
rels - Variable in class org.bdgp.apps.dagedit.datamodel.TermDeleteHistoryItem
 
rels - Variable in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
rels - Variable in class org.bdgp.apps.dagedit.datamodel.TermMoveHistoryItem
 
rels - Variable in class org.bdgp.apps.dagedit.datamodel.TermRelationshipHistoryItem
 
removeAllChildren() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
removeAllParents() - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
removeCategory(TermCategory) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
removeChild(Term) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
removeChild(TermRelationship) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
removeDanglingParent(DanglingRelationship) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
removeHistoryItem(HistoryItem) - Method in class org.bdgp.apps.dagedit.datamodel.TermMacroHistoryItem
 
removeItem(HistoryItem) - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
removeParent(Term) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
removeParent(TermRelationship) - Method in class org.bdgp.apps.dagedit.datamodel.Term
 
removeRelationshipType(TermRelationshipType) - Method in class org.bdgp.apps.dagedit.datamodel.DEEditHistory
 
removeTreeModelListener(TreeModelListener) - Method in class org.bdgp.apps.dagedit.datamodel.HistoryTreeModel
 
removeTreeModelListener(TreeModelListener) - Method in class org.bdgp.apps.dagedit.datamodel.TermModel
 
restoreState(Hashtable) - Method in class org.bdgp.apps.dagedit.datamodel.Dbxref
 
restoreState(Hashtable) - Method in class org.bdgp.apps.dagedit.datamodel.