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org.biomage.Array
Class ManufactureLIMS  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Common.Describable
          org.biomage.Array.ManufactureLIMS

All Implemented Interfaces:

org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasBioMaterial, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasFeature, org.biomage.Interface.HasIdentifierLIMS, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasSecurity, java.io.Serializable

Direct Known Subclasses:

ManufactureLIMSBiomaterial

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public class ManufactureLIMS

extends org.biomage.Common.Describable

implements java.io.Serializable, org.biomage.Interface.HasFeature, org.biomage.Interface.HasIdentifierLIMS, org.biomage.Interface.HasBioMaterial

Information on the physical production of arrays within the laboratory.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

org.biomage.Interface.HasAuditTrail.AuditTrail_list

 

Nested classes inherited from class org.biomage.Interface.HasDescriptions

org.biomage.Interface.HasDescriptions.Descriptions_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.BioMaterial.BioMaterial	bioMaterial           The BioMaterial used for the feature.
private  org.biomage.DesignElement.Feature	feature           The feature whose LIMS information is being described.
private  org.biomage.Description.DatabaseEntry	identifierLIMS           Association to a LIMS data source for further information on the manufacturing process.
(package private)  java.lang.String	quality           A brief description of the quality of the array manufacture process.

 

Fields inherited from class org.biomage.Common.Describable

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

ManufactureLIMS()           Default constructor.

ManufactureLIMS(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
org.biomage.BioMaterial.BioMaterial	getBioMaterial()           Get method for bioMaterial
org.biomage.DesignElement.Feature	getFeature()           Get method for feature
org.biomage.Description.DatabaseEntry	getIdentifierLIMS()           Get method for identifierLIMS
java.lang.String	getQuality()           Get method for quality
void	setBioMaterial(org.biomage.BioMaterial.BioMaterial bioMaterial)           Set method for bioMaterial
void	setFeature(org.biomage.DesignElement.Feature feature)           Set method for feature
void	setIdentifierLIMS(org.biomage.Description.DatabaseEntry identifierLIMS)           Set method for identifierLIMS
void	setQuality(java.lang.String quality)           Set method for quality
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

quality

java.lang.String quality

A brief description of the quality of the array manufacture process.

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feature

private org.biomage.DesignElement.Feature feature

The feature whose LIMS information is being described.

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identifierLIMS

private org.biomage.Description.DatabaseEntry identifierLIMS

Association to a LIMS data source for further information on the manufacturing process.

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bioMaterial

private org.biomage.BioMaterial.BioMaterial bioMaterial

The BioMaterial used for the feature.

Constructor Detail

ManufactureLIMS

public ManufactureLIMS()

Default constructor.

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ManufactureLIMS

public ManufactureLIMS(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setQuality

public void setQuality(java.lang.String quality)

Set method for quality

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getQuality

public java.lang.String getQuality()

Get method for quality

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setFeature

public void setFeature(org.biomage.DesignElement.Feature feature)

Set method for feature

Specified by:

setFeature in interface org.biomage.Interface.HasFeature

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getFeature

public org.biomage.DesignElement.Feature getFeature()

Get method for feature

Specified by:

getFeature in interface org.biomage.Interface.HasFeature

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setIdentifierLIMS

public void setIdentifierLIMS(org.biomage.Description.DatabaseEntry identifierLIMS)

Set method for identifierLIMS

Specified by:

setIdentifierLIMS in interface org.biomage.Interface.HasIdentifierLIMS

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getIdentifierLIMS

public org.biomage.Description.DatabaseEntry getIdentifierLIMS()

Get method for identifierLIMS

Specified by:

getIdentifierLIMS in interface org.biomage.Interface.HasIdentifierLIMS

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setBioMaterial

public void setBioMaterial(org.biomage.BioMaterial.BioMaterial bioMaterial)

Set method for bioMaterial

Specified by:

setBioMaterial in interface org.biomage.Interface.HasBioMaterial

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getBioMaterial

public org.biomage.BioMaterial.BioMaterial getBioMaterial()

Get method for bioMaterial

Specified by:

getBioMaterial in interface org.biomage.Interface.HasBioMaterial

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ Array overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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