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org.biomage.Array
Class PositionDelta  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Array.PositionDelta

All Implemented Interfaces:

org.biomage.Interface.HasDistanceUnit, org.biomage.Interface.HasPropertySets, java.io.Serializable

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public class PositionDelta

extends org.biomage.Common.Extendable

implements java.io.Serializable, org.biomage.Interface.HasDistanceUnit

The delta the feature was actually printed on the array from the position specified for the feature in the array design.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
(package private)  float	deltaX           Deviation from the y coordinate of this feature's position.
(package private)  float	deltaY           Deviation from the y coordinate of this feature's position.
private  org.biomage.Measurement.DistanceUnit	distanceUnit           The unit for the attributes.

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

PositionDelta()           Default constructor.

PositionDelta(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
float	getDeltaX()           Get method for deltaX
float	getDeltaY()           Get method for deltaY
org.biomage.Measurement.DistanceUnit	getDistanceUnit()           Get method for distanceUnit
void	setDeltaX(float deltaX)           Set method for deltaX
void	setDeltaY(float deltaY)           Set method for deltaY
void	setDistanceUnit(org.biomage.Measurement.DistanceUnit distanceUnit)           Set method for distanceUnit
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

deltaX

float deltaX

Deviation from the y coordinate of this feature's position.

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deltaY

float deltaY

Deviation from the y coordinate of this feature's position.

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distanceUnit

private org.biomage.Measurement.DistanceUnit distanceUnit

The unit for the attributes.

Constructor Detail

PositionDelta

public PositionDelta()

Default constructor.

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PositionDelta

public PositionDelta(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setDeltaX

public void setDeltaX(float deltaX)

Set method for deltaX

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getDeltaX

public float getDeltaX()

Get method for deltaX

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setDeltaY

public void setDeltaY(float deltaY)

Set method for deltaY

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getDeltaY

public float getDeltaY()

Get method for deltaY

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setDistanceUnit

public void setDistanceUnit(org.biomage.Measurement.DistanceUnit distanceUnit)

Set method for distanceUnit

Specified by:

setDistanceUnit in interface org.biomage.Interface.HasDistanceUnit

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getDistanceUnit

public org.biomage.Measurement.DistanceUnit getDistanceUnit()

Get method for distanceUnit

Specified by:

getDistanceUnit in interface org.biomage.Interface.HasDistanceUnit

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Overview  Package   Class  Use  Deprecated  Index
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SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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