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org.biomage.ArrayDesign
Class Zone  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Common.Describable
          org.biomage.Common.Identifiable
              org.biomage.ArrayDesign.Zone

All Implemented Interfaces:

org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasDistanceUnit, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasSecurity, java.io.Serializable

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public class Zone

extends org.biomage.Common.Identifiable

implements java.io.Serializable, org.biomage.Interface.HasDistanceUnit

Specifies the location of a zone on an array.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

org.biomage.Interface.HasAuditTrail.AuditTrail_list

 

Nested classes inherited from class org.biomage.Interface.HasDescriptions

org.biomage.Interface.HasDescriptions.Descriptions_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
(package private)  int	column           column position in the ZoneGroup.
private  org.biomage.Measurement.DistanceUnit	distanceUnit           Unit for the Zone attributes.
(package private)  float	lowerRightX           Boundary vertical lower right position relative to (0,0).
(package private)  float	lowerRightY           Boundary horizontal lower right position relative to (0,0).
(package private)  int	row           row position in the ZoneGroup
(package private)  float	upperLeftX           Boundary vertical upper left position relative to (0,0).
(package private)  float	upperLeftY           Boundary horizontal upper left position relative to (0,0).

 

Fields inherited from class org.biomage.Common.Identifiable

 

Fields inherited from class org.biomage.Common.Describable

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

Zone()           Default constructor.

Zone(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
int	getColumn()           Get method for column
org.biomage.Measurement.DistanceUnit	getDistanceUnit()           Get method for distanceUnit
float	getLowerRightX()           Get method for lowerRightX
float	getLowerRightY()           Get method for lowerRightY
int	getRow()           Get method for row
float	getUpperLeftX()           Get method for upperLeftX
float	getUpperLeftY()           Get method for upperLeftY
void	setColumn(int column)           Set method for column
void	setDistanceUnit(org.biomage.Measurement.DistanceUnit distanceUnit)           Set method for distanceUnit
void	setLowerRightX(float lowerRightX)           Set method for lowerRightX
void	setLowerRightY(float lowerRightY)           Set method for lowerRightY
void	setRow(int row)           Set method for row
void	setUpperLeftX(float upperLeftX)           Set method for upperLeftX
void	setUpperLeftY(float upperLeftY)           Set method for upperLeftY
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

 

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

row

int row

row position in the ZoneGroup

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column

int column

column position in the ZoneGroup.

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upperLeftX

float upperLeftX

Boundary vertical upper left position relative to (0,0).

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upperLeftY

float upperLeftY

Boundary horizontal upper left position relative to (0,0).

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lowerRightX

float lowerRightX

Boundary vertical lower right position relative to (0,0).

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lowerRightY

float lowerRightY

Boundary horizontal lower right position relative to (0,0).

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distanceUnit

private org.biomage.Measurement.DistanceUnit distanceUnit

Unit for the Zone attributes.

Constructor Detail

Zone

public Zone()

Default constructor.

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Zone

public Zone(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setRow

public void setRow(int row)

Set method for row

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getRow

public int getRow()

Get method for row

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setColumn

public void setColumn(int column)

Set method for column

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getColumn

public int getColumn()

Get method for column

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setUpperLeftX

public void setUpperLeftX(float upperLeftX)

Set method for upperLeftX

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getUpperLeftX

public float getUpperLeftX()

Get method for upperLeftX

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setUpperLeftY

public void setUpperLeftY(float upperLeftY)

Set method for upperLeftY

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getUpperLeftY

public float getUpperLeftY()

Get method for upperLeftY

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setLowerRightX

public void setLowerRightX(float lowerRightX)

Set method for lowerRightX

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getLowerRightX

public float getLowerRightX()

Get method for lowerRightX

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setLowerRightY

public void setLowerRightY(float lowerRightY)

Set method for lowerRightY

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getLowerRightY

public float getLowerRightY()

Get method for lowerRightY

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setDistanceUnit

public void setDistanceUnit(org.biomage.Measurement.DistanceUnit distanceUnit)

Set method for distanceUnit

Specified by:

setDistanceUnit in interface org.biomage.Interface.HasDistanceUnit

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getDistanceUnit

public org.biomage.Measurement.DistanceUnit getDistanceUnit()

Get method for distanceUnit

Specified by:

getDistanceUnit in interface org.biomage.Interface.HasDistanceUnit

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ ArrayDesign overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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