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org.biomage.BioAssay
Class ImageAcquisition  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Common.Describable
          org.biomage.Common.Identifiable
              org.biomage.BioEvent.BioEvent
                  org.biomage.BioAssay.BioAssayTreatment
                      org.biomage.BioAssay.ImageAcquisition

All Implemented Interfaces:

org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasImages, org.biomage.Interface.HasPhysicalBioAssay, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasProtocolApplications, org.biomage.Interface.HasSecurity, org.biomage.Interface.HasTarget, java.io.Serializable

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public class ImageAcquisition

extends BioAssayTreatment

implements java.io.Serializable, org.biomage.Interface.HasImages

The process by which an image is generated (typically scanning).

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasImages

org.biomage.Interface.HasImages.Images_list

 

Nested classes inherited from class org.biomage.Interface.HasProtocolApplications

org.biomage.Interface.HasProtocolApplications.ProtocolApplications_list

 

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

org.biomage.Interface.HasAuditTrail.AuditTrail_list

 

Nested classes inherited from class org.biomage.Interface.HasDescriptions

org.biomage.Interface.HasDescriptions.Descriptions_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.Interface.HasImages.Images_list	images           The images produced by the ImageAcquisition event.

 

Fields inherited from class org.biomage.BioAssay.BioAssayTreatment

 

Fields inherited from class org.biomage.BioEvent.BioEvent

 

Fields inherited from class org.biomage.Common.Identifiable

 

Fields inherited from class org.biomage.Common.Describable

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

ImageAcquisition()           Default constructor.

ImageAcquisition(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToImages(Image image)           Method to add Image to Images_list
void	addToImages(int position, Image image)           Method to add Image at position to Images_list
Image	getFromImages(int position)           Method to get Image from Images_list
org.biomage.Interface.HasImages.Images_list	getImages()           Get method for images
void	removeElementAtFromImages(int position)           Method to remove by position from Images_list
void	removeFromImages(Image image)           Method to remove first Image from Images_list
void	setImages(org.biomage.Interface.HasImages.Images_list images)           Set method for images
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.BioAssay.BioAssayTreatment

getPhysicalBioAssay, getTarget, setPhysicalBioAssay, setTarget

 

Methods inherited from class org.biomage.BioEvent.BioEvent

addToProtocolApplications, addToProtocolApplications, getFromProtocolApplications, getProtocolApplications, removeElementAtFromProtocolApplications, removeFromProtocolApplications, setProtocolApplications

 

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

 

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

images

private org.biomage.Interface.HasImages.Images_list images

The images produced by the ImageAcquisition event.

Constructor Detail

ImageAcquisition

public ImageAcquisition()

Default constructor.

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ImageAcquisition

public ImageAcquisition(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class BioAssayTreatment

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class BioAssayTreatment

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class BioAssayTreatment

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setImages

public void setImages(org.biomage.Interface.HasImages.Images_list images)

Set method for images

Specified by:

setImages in interface org.biomage.Interface.HasImages

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getImages

public org.biomage.Interface.HasImages.Images_list getImages()

Get method for images

Specified by:

getImages in interface org.biomage.Interface.HasImages

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addToImages

public void addToImages(Image image)

Method to add Image to Images_list

Specified by:

addToImages in interface org.biomage.Interface.HasImages

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addToImages

public void addToImages(int position,
                        Image image)

Method to add Image at position to Images_list

Specified by:

addToImages in interface org.biomage.Interface.HasImages

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getFromImages

public Image getFromImages(int position)

Method to get Image from Images_list

Specified by:

getFromImages in interface org.biomage.Interface.HasImages

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removeElementAtFromImages

public void removeElementAtFromImages(int position)

Method to remove by position from Images_list

Specified by:

removeElementAtFromImages in interface org.biomage.Interface.HasImages

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removeFromImages

public void removeFromImages(Image image)

Method to remove first Image from Images_list

Specified by:

removeFromImages in interface org.biomage.Interface.HasImages

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioAssay overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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