Uses of Class org.biomage.BioAssay.PhysicalBioAssay

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Fields in org.biomage.BioAssay declared as PhysicalBioAssay

private PhysicalBioAssay FeatureExtraction.physicalBioAssaySource
          The PhysicalBioAssay used in the FeatureExtraction event.

private PhysicalBioAssay BioAssayTreatment.physicalBioAssay
          The set of treatments undergone by this PhysicalBioAssay.

private PhysicalBioAssay BioAssayTreatment.target
          The PhysicalBioAssay that was treated.

private PhysicalBioAssay BioAssayCreation.physicalBioAssayTarget
          The association between the BioAssayCreation event (typically Hybridization) and the PhysicalBioAssay and its annotation of this event.

Methods in org.biomage.BioAssay that return PhysicalBioAssay

PhysicalBioAssay FeatureExtraction.getPhysicalBioAssaySource()
          Get method for physicalBioAssaySource

PhysicalBioAssay BioAssayTreatment.getPhysicalBioAssay()
          Get method for physicalBioAssay

PhysicalBioAssay BioAssayTreatment.getTarget()
          Get method for target

PhysicalBioAssay BioAssayCreation.getPhysicalBioAssayTarget()
          Get method for physicalBioAssayTarget

PhysicalBioAssay BioAssay_package.getFromPhysicalBioAssay_list(int position)
          Method to get PhysicalBioAssay from PhysicalBioAssay_list

Methods in org.biomage.BioAssay with parameters of type PhysicalBioAssay

void FeatureExtraction.setPhysicalBioAssaySource(PhysicalBioAssay physicalBioAssaySource)
          Set method for physicalBioAssaySource

void BioAssayTreatment.setPhysicalBioAssay(PhysicalBioAssay physicalBioAssay)
          Set method for physicalBioAssay

void BioAssayTreatment.setTarget(PhysicalBioAssay target)
          Set method for target

void BioAssayCreation.setPhysicalBioAssayTarget(PhysicalBioAssay physicalBioAssayTarget)
          Set method for physicalBioAssayTarget

void BioAssay_package.addToPhysicalBioAssay_list(PhysicalBioAssay physicalBioAssay)
          Method to add PhysicalBioAssay to PhysicalBioAssay_list

void BioAssay_package.addToPhysicalBioAssay_list(int position, PhysicalBioAssay physicalBioAssay)
          Method to add PhysicalBioAssay at position to PhysicalBioAssay_list

void BioAssay_package.removeFromPhysicalBioAssay_list(PhysicalBioAssay physicalBioAssay)
          Method to remove first PhysicalBioAssay from PhysicalBioAssay_list