Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioAssayData overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

---

org.biomage.BioAssayData
Class BioAssayDatum  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.BioAssayData.BioAssayDatum

All Implemented Interfaces:

org.biomage.Interface.HasBioAssay, org.biomage.Interface.HasDesignElement, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasQuantitationType, java.io.Serializable

---

public class BioAssayDatum

extends org.biomage.Common.Extendable

implements java.io.Serializable, org.biomage.Interface.HasBioAssay, org.biomage.Interface.HasDesignElement, org.biomage.Interface.HasQuantitationType

A single cell of the quantitation, bioAssay, designElement matrix.

---

Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.BioAssay.BioAssay	bioAssay           The BioAssay associated with the value of the BioAssayDatum.
private  org.biomage.DesignElement.DesignElement	designElement           The DesignElement associated with the value of the BioAssayDatum.
private  org.biomage.QuantitationType.QuantitationType	quantitationType           The QuantitationType associated with the value of the BioAssayDatum.
(package private)  java.lang.Object	value           The datum value.

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

BioAssayDatum()           Default constructor.

BioAssayDatum(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
org.biomage.BioAssay.BioAssay	getBioAssay()           Get method for bioAssay
org.biomage.DesignElement.DesignElement	getDesignElement()           Get method for designElement
org.biomage.QuantitationType.QuantitationType	getQuantitationType()           Get method for quantitationType
java.lang.Object	getValue()           Get method for value
void	setBioAssay(org.biomage.BioAssay.BioAssay bioAssay)           Set method for bioAssay
void	setDesignElement(org.biomage.DesignElement.DesignElement designElement)           Set method for designElement
void	setQuantitationType(org.biomage.QuantitationType.QuantitationType quantitationType)           Set method for quantitationType
void	setValue(java.lang.Object value)           Set method for value
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

value

java.lang.Object value

The datum value.

---

bioAssay

private org.biomage.BioAssay.BioAssay bioAssay

The BioAssay associated with the value of the BioAssayDatum.

---

designElement

private org.biomage.DesignElement.DesignElement designElement

The DesignElement associated with the value of the BioAssayDatum.

---

quantitationType

private org.biomage.QuantitationType.QuantitationType quantitationType

The QuantitationType associated with the value of the BioAssayDatum.

Constructor Detail

BioAssayDatum

public BioAssayDatum()

Default constructor.

---

BioAssayDatum

public BioAssayDatum(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

---

writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

---

writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

---

setValue

public void setValue(java.lang.Object value)

Set method for value

---

getValue

public java.lang.Object getValue()

Get method for value

---

setBioAssay

public void setBioAssay(org.biomage.BioAssay.BioAssay bioAssay)

Set method for bioAssay

Specified by:

setBioAssay in interface org.biomage.Interface.HasBioAssay

---

getBioAssay

public org.biomage.BioAssay.BioAssay getBioAssay()

Get method for bioAssay

Specified by:

getBioAssay in interface org.biomage.Interface.HasBioAssay

---

setDesignElement

public void setDesignElement(org.biomage.DesignElement.DesignElement designElement)

Set method for designElement

Specified by:

setDesignElement in interface org.biomage.Interface.HasDesignElement

---

getDesignElement

public org.biomage.DesignElement.DesignElement getDesignElement()

Get method for designElement

Specified by:

getDesignElement in interface org.biomage.Interface.HasDesignElement

---

setQuantitationType

public void setQuantitationType(org.biomage.QuantitationType.QuantitationType quantitationType)

Set method for quantitationType

Specified by:

setQuantitationType in interface org.biomage.Interface.HasQuantitationType

---

getQuantitationType

public org.biomage.QuantitationType.QuantitationType getQuantitationType()

Get method for quantitationType

Specified by:

getQuantitationType in interface org.biomage.Interface.HasQuantitationType

---

Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioAssayData overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

---