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org.biomage.BioAssayData
Class BioAssayDimension  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Common.Describable
          org.biomage.Common.Identifiable
              org.biomage.BioAssayData.BioAssayDimension

All Implemented Interfaces:

org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasBioAssays, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasSecurity, java.io.Serializable

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public class BioAssayDimension

extends org.biomage.Common.Identifiable

implements java.io.Serializable, org.biomage.Interface.HasBioAssays

An ordered list of bioAssays.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasBioAssays

org.biomage.Interface.HasBioAssays.BioAssays_list

 

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

org.biomage.Interface.HasAuditTrail.AuditTrail_list

 

Nested classes inherited from class org.biomage.Interface.HasDescriptions

org.biomage.Interface.HasDescriptions.Descriptions_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.Interface.HasBioAssays.BioAssays_list	bioAssays           The BioAssays for this Dimension

 

Fields inherited from class org.biomage.Common.Identifiable

 

Fields inherited from class org.biomage.Common.Describable

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

BioAssayDimension()           Default constructor.

BioAssayDimension(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToBioAssays(org.biomage.BioAssay.BioAssay bioAssay)           Method to add BioAssay to BioAssays_list
void	addToBioAssays(int position, org.biomage.BioAssay.BioAssay bioAssay)           Method to add BioAssay at position to BioAssays_list
org.biomage.Interface.HasBioAssays.BioAssays_list	getBioAssays()           Get method for bioAssays
org.biomage.BioAssay.BioAssay	getFromBioAssays(int position)           Method to get BioAssay from BioAssays_list
void	removeElementAtFromBioAssays(int position)           Method to remove by position from BioAssays_list
void	removeFromBioAssays(org.biomage.BioAssay.BioAssay bioAssay)           Method to remove first BioAssay from BioAssays_list
void	setBioAssays(org.biomage.Interface.HasBioAssays.BioAssays_list bioAssays)           Set method for bioAssays
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

 

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

bioAssays

private org.biomage.Interface.HasBioAssays.BioAssays_list bioAssays

The BioAssays for this Dimension

Constructor Detail

BioAssayDimension

public BioAssayDimension()

Default constructor.

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BioAssayDimension

public BioAssayDimension(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setBioAssays

public void setBioAssays(org.biomage.Interface.HasBioAssays.BioAssays_list bioAssays)

Set method for bioAssays

Specified by:

setBioAssays in interface org.biomage.Interface.HasBioAssays

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getBioAssays

public org.biomage.Interface.HasBioAssays.BioAssays_list getBioAssays()

Get method for bioAssays

Specified by:

getBioAssays in interface org.biomage.Interface.HasBioAssays

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addToBioAssays

public void addToBioAssays(org.biomage.BioAssay.BioAssay bioAssay)

Method to add BioAssay to BioAssays_list

Specified by:

addToBioAssays in interface org.biomage.Interface.HasBioAssays

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addToBioAssays

public void addToBioAssays(int position,
                           org.biomage.BioAssay.BioAssay bioAssay)

Method to add BioAssay at position to BioAssays_list

Specified by:

addToBioAssays in interface org.biomage.Interface.HasBioAssays

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getFromBioAssays

public org.biomage.BioAssay.BioAssay getFromBioAssays(int position)

Method to get BioAssay from BioAssays_list

Specified by:

getFromBioAssays in interface org.biomage.Interface.HasBioAssays

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removeElementAtFromBioAssays

public void removeElementAtFromBioAssays(int position)

Method to remove by position from BioAssays_list

Specified by:

removeElementAtFromBioAssays in interface org.biomage.Interface.HasBioAssays

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removeFromBioAssays

public void removeFromBioAssays(org.biomage.BioAssay.BioAssay bioAssay)

Method to remove first BioAssay from BioAssays_list

Specified by:

removeFromBioAssays in interface org.biomage.Interface.HasBioAssays

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioAssayData overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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