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org.biomage.BioAssayData
Class BioDataCube  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.BioAssayData.BioDataValues
          org.biomage.BioAssayData.BioDataCube

All Implemented Interfaces:

org.biomage.Interface.HasPropertySets, java.io.Serializable

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public class BioDataCube

extends BioDataValues

implements java.io.Serializable

A three-dimensional cube representation of the data.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
(package private)  java.lang.Object[][][]	cube           Three dimension array, indexed by the three dimensions to provide the data for the BioAssayData.

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

BioDataCube()           Default constructor.

BioDataCube(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
java.lang.Object[][][]	getCube()           Get method for cube
void	setCube(java.lang.Object[][][] cube)           Set method for cube
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

cube

java.lang.Object[][][] cube

Three dimension array, indexed by the three dimensions to provide the data for the BioAssayData.

Constructor Detail

BioDataCube

public BioDataCube()

Default constructor.

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BioDataCube

public BioDataCube(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class BioDataValues

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class BioDataValues

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class BioDataValues

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setCube

public void setCube(java.lang.Object[][][] cube)

Set method for cube

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getCube

public java.lang.Object[][][] getCube()

Get method for cube

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