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org.biomage.BioAssayData
Class BioDataTuples  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.BioAssayData.BioDataValues
          org.biomage.BioAssayData.BioDataTuples

All Implemented Interfaces:

org.biomage.Interface.HasBioAssayTupleData, org.biomage.Interface.HasPropertySets, java.io.Serializable

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public class BioDataTuples

extends BioDataValues

implements java.io.Serializable, org.biomage.Interface.HasBioAssayTupleData

A relational, tuple representation of the data.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasBioAssayTupleData

org.biomage.Interface.HasBioAssayTupleData.BioAssayTupleData_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.Interface.HasBioAssayTupleData.BioAssayTupleData_list	bioAssayTupleData           The collection of BioAssayData tuples.

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

BioDataTuples()           Default constructor.

BioDataTuples(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToBioAssayTupleData(BioAssayDatum bioAssayDatum)           Method to add BioAssayDatum to BioAssayTupleData_list
void	addToBioAssayTupleData(int position, BioAssayDatum bioAssayDatum)           Method to add BioAssayDatum at position to BioAssayTupleData_list
org.biomage.Interface.HasBioAssayTupleData.BioAssayTupleData_list	getBioAssayTupleData()           Get method for bioAssayTupleData
BioAssayDatum	getFromBioAssayTupleData(int position)           Method to get BioAssayDatum from BioAssayTupleData_list
void	removeElementAtFromBioAssayTupleData(int position)           Method to remove by position from BioAssayTupleData_list
void	removeFromBioAssayTupleData(BioAssayDatum bioAssayDatum)           Method to remove first BioAssayDatum from BioAssayTupleData_list
void	setBioAssayTupleData(org.biomage.Interface.HasBioAssayTupleData.BioAssayTupleData_list bioAssayTupleData)           Set method for bioAssayTupleData
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

bioAssayTupleData

private org.biomage.Interface.HasBioAssayTupleData.BioAssayTupleData_list bioAssayTupleData

The collection of BioAssayData tuples.

Constructor Detail

BioDataTuples

public BioDataTuples()

Default constructor.

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BioDataTuples

public BioDataTuples(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class BioDataValues

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class BioDataValues

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class BioDataValues

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setBioAssayTupleData

public void setBioAssayTupleData(org.biomage.Interface.HasBioAssayTupleData.BioAssayTupleData_list bioAssayTupleData)

Set method for bioAssayTupleData

Specified by:

setBioAssayTupleData in interface org.biomage.Interface.HasBioAssayTupleData

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getBioAssayTupleData

public org.biomage.Interface.HasBioAssayTupleData.BioAssayTupleData_list getBioAssayTupleData()

Get method for bioAssayTupleData

Specified by:

getBioAssayTupleData in interface org.biomage.Interface.HasBioAssayTupleData

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addToBioAssayTupleData

public void addToBioAssayTupleData(BioAssayDatum bioAssayDatum)

Method to add BioAssayDatum to BioAssayTupleData_list

Specified by:

addToBioAssayTupleData in interface org.biomage.Interface.HasBioAssayTupleData

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addToBioAssayTupleData

public void addToBioAssayTupleData(int position,
                                   BioAssayDatum bioAssayDatum)

Method to add BioAssayDatum at position to BioAssayTupleData_list

Specified by:

addToBioAssayTupleData in interface org.biomage.Interface.HasBioAssayTupleData

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getFromBioAssayTupleData

public BioAssayDatum getFromBioAssayTupleData(int position)

Method to get BioAssayDatum from BioAssayTupleData_list

Specified by:

getFromBioAssayTupleData in interface org.biomage.Interface.HasBioAssayTupleData

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removeElementAtFromBioAssayTupleData

public void removeElementAtFromBioAssayTupleData(int position)

Method to remove by position from BioAssayTupleData_list

Specified by:

removeElementAtFromBioAssayTupleData in interface org.biomage.Interface.HasBioAssayTupleData

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removeFromBioAssayTupleData

public void removeFromBioAssayTupleData(BioAssayDatum bioAssayDatum)

Method to remove first BioAssayDatum from BioAssayTupleData_list

Specified by:

removeFromBioAssayTupleData in interface org.biomage.Interface.HasBioAssayTupleData

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioAssayData overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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