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org.biomage.BioAssayData
Class DesignElementMapping  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.BioAssayData.DesignElementMapping

All Implemented Interfaces:

org.biomage.Interface.HasDesignElementMaps, org.biomage.Interface.HasPropertySets, java.io.Serializable

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public class DesignElementMapping

extends org.biomage.Common.Extendable

implements java.io.Serializable, org.biomage.Interface.HasDesignElementMaps

Container of the mappings of the input DesignElement dimensions to the output DesignElement dimension.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasDesignElementMaps

org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list	designElementMaps           The maps for the DesignElements.

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

DesignElementMapping()           Default constructor.

DesignElementMapping(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToDesignElementMaps(DesignElementMap designElementMap)           Method to add DesignElementMap to DesignElementMaps_list
void	addToDesignElementMaps(int position, DesignElementMap designElementMap)           Method to add DesignElementMap at position to DesignElementMaps_list
org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list	getDesignElementMaps()           Get method for designElementMaps
DesignElementMap	getFromDesignElementMaps(int position)           Method to get DesignElementMap from DesignElementMaps_list
void	removeElementAtFromDesignElementMaps(int position)           Method to remove by position from DesignElementMaps_list
void	removeFromDesignElementMaps(DesignElementMap designElementMap)           Method to remove first DesignElementMap from DesignElementMaps_list
void	setDesignElementMaps(org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list designElementMaps)           Set method for designElementMaps
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

designElementMaps

private org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list designElementMaps

The maps for the DesignElements.

Constructor Detail

DesignElementMapping

public DesignElementMapping()

Default constructor.

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DesignElementMapping

public DesignElementMapping(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setDesignElementMaps

public void setDesignElementMaps(org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list designElementMaps)

Set method for designElementMaps

Specified by:

setDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

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getDesignElementMaps

public org.biomage.Interface.HasDesignElementMaps.DesignElementMaps_list getDesignElementMaps()

Get method for designElementMaps

Specified by:

getDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

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addToDesignElementMaps

public void addToDesignElementMaps(DesignElementMap designElementMap)

Method to add DesignElementMap to DesignElementMaps_list

Specified by:

addToDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

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addToDesignElementMaps

public void addToDesignElementMaps(int position,
                                   DesignElementMap designElementMap)

Method to add DesignElementMap at position to DesignElementMaps_list

Specified by:

addToDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

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getFromDesignElementMaps

public DesignElementMap getFromDesignElementMaps(int position)

Method to get DesignElementMap from DesignElementMaps_list

Specified by:

getFromDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

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removeElementAtFromDesignElementMaps

public void removeElementAtFromDesignElementMaps(int position)

Method to remove by position from DesignElementMaps_list

Specified by:

removeElementAtFromDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

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removeFromDesignElementMaps

public void removeFromDesignElementMaps(DesignElementMap designElementMap)

Method to remove first DesignElementMap from DesignElementMaps_list

Specified by:

removeFromDesignElementMaps in interface org.biomage.Interface.HasDesignElementMaps

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioAssayData overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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