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org.biomage.BioAssayData
Class QuantitationTypeMapping  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.BioAssayData.QuantitationTypeMapping

All Implemented Interfaces:

org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasQuantitationTypeMaps, java.io.Serializable

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public class QuantitationTypeMapping

extends org.biomage.Common.Extendable

implements java.io.Serializable, org.biomage.Interface.HasQuantitationTypeMaps

Container of the mappings of the input QuantitationType dimensions to the output QuantitationType dimension.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasQuantitationTypeMaps

org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list	quantitationTypeMaps           The maps for the QuantitationTypes.

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

QuantitationTypeMapping()           Default constructor.

QuantitationTypeMapping(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToQuantitationTypeMaps(int position, QuantitationTypeMap quantitationTypeMap)           Method to add QuantitationTypeMap at position to QuantitationTypeMaps_list
void	addToQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)           Method to add QuantitationTypeMap to QuantitationTypeMaps_list
QuantitationTypeMap	getFromQuantitationTypeMaps(int position)           Method to get QuantitationTypeMap from QuantitationTypeMaps_list
org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list	getQuantitationTypeMaps()           Get method for quantitationTypeMaps
void	removeElementAtFromQuantitationTypeMaps(int position)           Method to remove by position from QuantitationTypeMaps_list
void	removeFromQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)           Method to remove first QuantitationTypeMap from QuantitationTypeMaps_list
void	setQuantitationTypeMaps(org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps)           Set method for quantitationTypeMaps
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

quantitationTypeMaps

private org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps

The maps for the QuantitationTypes.

Constructor Detail

QuantitationTypeMapping

public QuantitationTypeMapping()

Default constructor.

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QuantitationTypeMapping

public QuantitationTypeMapping(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setQuantitationTypeMaps

public void setQuantitationTypeMaps(org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list quantitationTypeMaps)

Set method for quantitationTypeMaps

Specified by:

setQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

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getQuantitationTypeMaps

public org.biomage.Interface.HasQuantitationTypeMaps.QuantitationTypeMaps_list getQuantitationTypeMaps()

Get method for quantitationTypeMaps

Specified by:

getQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

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addToQuantitationTypeMaps

public void addToQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)

Method to add QuantitationTypeMap to QuantitationTypeMaps_list

Specified by:

addToQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

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addToQuantitationTypeMaps

public void addToQuantitationTypeMaps(int position,
                                      QuantitationTypeMap quantitationTypeMap)

Method to add QuantitationTypeMap at position to QuantitationTypeMaps_list

Specified by:

addToQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

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getFromQuantitationTypeMaps

public QuantitationTypeMap getFromQuantitationTypeMaps(int position)

Method to get QuantitationTypeMap from QuantitationTypeMaps_list

Specified by:

getFromQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

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removeElementAtFromQuantitationTypeMaps

public void removeElementAtFromQuantitationTypeMaps(int position)

Method to remove by position from QuantitationTypeMaps_list

Specified by:

removeElementAtFromQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

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removeFromQuantitationTypeMaps

public void removeFromQuantitationTypeMaps(QuantitationTypeMap quantitationTypeMap)

Method to remove first QuantitationTypeMap from QuantitationTypeMaps_list

Specified by:

removeFromQuantitationTypeMaps in interface org.biomage.Interface.HasQuantitationTypeMaps

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioAssayData overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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