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A
- addToBioEvent_list(BioEvent) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to add BioEvent to BioEvent_list
- addToBioEvent_list(int, BioEvent) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to add BioEvent at position to BioEvent_list
- addToMap_list(Map) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to add Map to Map_list
- addToMap_list(int, Map) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to add Map at position to Map_list
- addToProtocolApplications(ProtocolApplication) - Method in class org.biomage.BioEvent.BioEvent
- Method to add ProtocolApplication to ProtocolApplications_list
- addToProtocolApplications(int, ProtocolApplication) - Method in class org.biomage.BioEvent.BioEvent
- Method to add ProtocolApplication at position to ProtocolApplications_list
B
- BioEvent - class org.biomage.BioEvent.BioEvent.
- An abstract class to capture the concept of an event (either in the laboratory or a computational analysis).
- BioEvent() - Constructor for class org.biomage.BioEvent.BioEvent
- Default constructor.
- BioEvent(Attributes) - Constructor for class org.biomage.BioEvent.BioEvent
- Attribute constructor.
- BioEvent_package - class org.biomage.BioEvent.BioEvent_package.
- An abstract class representing an event that takes sources of some type to produce a target of some type.
- BioEvent_package() - Constructor for class org.biomage.BioEvent.BioEvent_package
- Default constructor.
- BioEvent_package(Attributes) - Constructor for class org.biomage.BioEvent.BioEvent_package
- Attribute constructor.
- BioEvent_package.BioEvent_list - class org.biomage.BioEvent.BioEvent_package.BioEvent_list.
- Inner list class for holding multiple entries for attribute bioEvent_list.
- BioEvent_package.BioEvent_list() - Constructor for class org.biomage.BioEvent.BioEvent_package.BioEvent_list
- BioEvent_package.Map_list - class org.biomage.BioEvent.BioEvent_package.Map_list.
- Inner list class for holding multiple entries for attribute map_list.
- BioEvent_package.Map_list() - Constructor for class org.biomage.BioEvent.BioEvent_package.Map_list
- bioEvent_list - Variable in class org.biomage.BioEvent.BioEvent_package
- An abstract class to capture the concept of an event (either in the laboratory or a computational analysis).
G
- getBioEvent_list() - Method in class org.biomage.BioEvent.BioEvent_package
- Get method for bioEvent_list
- getFromBioEvent_list(int) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to get BioEvent from BioEvent_list
- getFromMap_list(int) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to get Map from Map_list
- getFromProtocolApplications(int) - Method in class org.biomage.BioEvent.BioEvent
- Method to get ProtocolApplication from ProtocolApplications_list
- getMap_list() - Method in class org.biomage.BioEvent.BioEvent_package
- Get method for map_list
- getProtocolApplications() - Method in class org.biomage.BioEvent.BioEvent
- Get method for protocolApplications
M
- Map - class org.biomage.BioEvent.Map.
- A Map is the description of how sources are transformed into a target.
- Map() - Constructor for class org.biomage.BioEvent.Map
- Default constructor.
- Map(Attributes) - Constructor for class org.biomage.BioEvent.Map
- Attribute constructor.
- map_list - Variable in class org.biomage.BioEvent.BioEvent_package
- A Map is the description of how sources are transformed into a target.
O
- org.biomage.BioEvent - package org.biomage.BioEvent
P
- protocolApplications - Variable in class org.biomage.BioEvent.BioEvent
- The applied protocols to the BioEvent.
R
- removeElementAtFromBioEvent_list(int) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to remove by position from BioEvent_list
- removeElementAtFromMap_list(int) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to remove by position from Map_list
- removeElementAtFromProtocolApplications(int) - Method in class org.biomage.BioEvent.BioEvent
- Method to remove by position from ProtocolApplications_list
- removeFromBioEvent_list(BioEvent) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to remove first BioEvent from BioEvent_list
- removeFromMap_list(Map) - Method in class org.biomage.BioEvent.BioEvent_package
- Method to remove first Map from Map_list
- removeFromProtocolApplications(ProtocolApplication) - Method in class org.biomage.BioEvent.BioEvent
- Method to remove first ProtocolApplication from ProtocolApplications_list
S
- setBioEvent_list(BioEvent_package.BioEvent_list) - Method in class org.biomage.BioEvent.BioEvent_package
- Set method for bioEvent_list
- setMap_list(BioEvent_package.Map_list) - Method in class org.biomage.BioEvent.BioEvent_package
- Set method for map_list
- setProtocolApplications(HasProtocolApplications.ProtocolApplications_list) - Method in class org.biomage.BioEvent.BioEvent
- Set method for protocolApplications
W
- writeAssociations(Writer) - Method in class org.biomage.BioEvent.BioEvent
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.BioEvent.BioEvent_package
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.BioEvent.Map
- writeAssociations
- writeAttributes(Writer) - Method in class org.biomage.BioEvent.BioEvent
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.BioEvent.BioEvent_package
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.BioEvent.Map
- writeAttributes
- writeMAGEML(Writer) - Method in class org.biomage.BioEvent.BioEvent
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.BioEvent.BioEvent_package
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.BioEvent.Map
- writeMAGEML
A B G M O P R S W
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