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org.biomage.BioMaterial
Class CompoundMeasurement  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.BioMaterial.CompoundMeasurement

All Implemented Interfaces:

org.biomage.Interface.HasCompound, org.biomage.Interface.HasMeasurement, org.biomage.Interface.HasPropertySets, java.io.Serializable

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public class CompoundMeasurement

extends org.biomage.Common.Extendable

implements java.io.Serializable, org.biomage.Interface.HasCompound, org.biomage.Interface.HasMeasurement

A CompoundMeasurement is a pairing of a source Compound and an amount (Measurement) of that Compound.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  Compound	compound           A Compound to be used to create another Compound.
private  org.biomage.Measurement.Measurement	measurement           The amount of the Compound.

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

CompoundMeasurement()           Default constructor.

CompoundMeasurement(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
Compound	getCompound()           Get method for compound
org.biomage.Measurement.Measurement	getMeasurement()           Get method for measurement
void	setCompound(Compound compound)           Set method for compound
void	setMeasurement(org.biomage.Measurement.Measurement measurement)           Set method for measurement
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

compound

private Compound compound

A Compound to be used to create another Compound.

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measurement

private org.biomage.Measurement.Measurement measurement

The amount of the Compound.

Constructor Detail

CompoundMeasurement

public CompoundMeasurement()

Default constructor.

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CompoundMeasurement

public CompoundMeasurement(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setCompound

public void setCompound(Compound compound)

Set method for compound

Specified by:

setCompound in interface org.biomage.Interface.HasCompound

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getCompound

public Compound getCompound()

Get method for compound

Specified by:

getCompound in interface org.biomage.Interface.HasCompound

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setMeasurement

public void setMeasurement(org.biomage.Measurement.Measurement measurement)

Set method for measurement

Specified by:

setMeasurement in interface org.biomage.Interface.HasMeasurement

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getMeasurement

public org.biomage.Measurement.Measurement getMeasurement()

Get method for measurement

Specified by:

getMeasurement in interface org.biomage.Interface.HasMeasurement

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ BioMaterial overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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