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Uses of Package
org.biomage.DesignElement

Classes in org.biomage.DesignElement used by org.biomage.DesignElement
CompositeCompositeMap
          A CompositeCompositeMap is the description of how source CompositeSequences are transformed into a target CompositeSequence.
CompositePosition
          The location in the compositeSequence target's sequence to which a source compositeSequence maps.
CompositeSequence
          A collection of Reporter or CompositeSequence Design Elements, annotated through the association to BioSequence.
DesignElement
          An element of an array.
DesignElement_package.CompositeCompositeMap_list
          Inner list class for holding multiple entries for attribute compositeCompositeMap_list.
DesignElement_package.CompositeSequence_list
          Inner list class for holding multiple entries for attribute compositeSequence_list.
DesignElement_package.DesignElement_list
          Inner list class for holding multiple entries for attribute designElement_list.
DesignElement_package.FeatureReporterMap_list
          Inner list class for holding multiple entries for attribute featureReporterMap_list.
DesignElement_package.Reporter_list
          Inner list class for holding multiple entries for attribute reporter_list.
DesignElement_package.ReporterCompositeMap_list
          Inner list class for holding multiple entries for attribute reporterCompositeMap_list.
Feature
          An intended position on an array.
FeatureInformation
          As part of the map information, allows the association of one or more differences in the BioMaterial on a feature from the BioMaterial of the Reporter.
FeatureLocation
          Specifies where a feature is located relative to a grid.
FeatureReporterMap
          A FeatureReporterMap is the description of how source features are transformed into a target reporter.
MismatchInformation
          Describes how a reporter varies from its ReporterCharacteristics sequence(s) or how a Feature varies from its Reporter sequence.
Position
          Specifies a position on an array.
Reporter
          A Design Element that represents some biological material (clone, oligo, etc.) on an array which will report on some biosequence or biosequences.
ReporterCompositeMap
          A ReporterCompositeMap is the description of how source Reporters are transformed into a target CompositeSequences.
ReporterPosition
          The location in the composite target's sequence to which a source reporter maps.