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org.biomage.Protocol
Class ParameterizableApplication  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Common.Describable
          org.biomage.Protocol.ParameterizableApplication

All Implemented Interfaces:

org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasParameterValues, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasSecurity, java.io.Serializable

Direct Known Subclasses:

HardwareApplication, ProtocolApplication, SoftwareApplication

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public abstract class ParameterizableApplication

extends org.biomage.Common.Describable

implements java.io.Serializable, org.biomage.Interface.HasParameterValues

The interface that is the use of a Parameterizable class.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasParameterValues

org.biomage.Interface.HasParameterValues.ParameterValues_list

 

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

org.biomage.Interface.HasAuditTrail.AuditTrail_list

 

Nested classes inherited from class org.biomage.Interface.HasDescriptions

org.biomage.Interface.HasDescriptions.Descriptions_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  org.biomage.Interface.HasParameterValues.ParameterValues_list	parameterValues           The parameter values for this Parameterizable Application.

 

Fields inherited from class org.biomage.Common.Describable

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

ParameterizableApplication()           Default constructor.

ParameterizableApplication(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
void	addToParameterValues(int position, ParameterValue parameterValue)           Method to add ParameterValue at position to ParameterValues_list
void	addToParameterValues(ParameterValue parameterValue)           Method to add ParameterValue to ParameterValues_list
ParameterValue	getFromParameterValues(int position)           Method to get ParameterValue from ParameterValues_list
org.biomage.Interface.HasParameterValues.ParameterValues_list	getParameterValues()           Get method for parameterValues
void	removeElementAtFromParameterValues(int position)           Method to remove by position from ParameterValues_list
void	removeFromParameterValues(ParameterValue parameterValue)           Method to remove first ParameterValue from ParameterValues_list
void	setParameterValues(org.biomage.Interface.HasParameterValues.ParameterValues_list parameterValues)           Set method for parameterValues
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

parameterValues

private org.biomage.Interface.HasParameterValues.ParameterValues_list parameterValues

The parameter values for this Parameterizable Application.

Constructor Detail

ParameterizableApplication

public ParameterizableApplication()

Default constructor.

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ParameterizableApplication

public ParameterizableApplication(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

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setParameterValues

public void setParameterValues(org.biomage.Interface.HasParameterValues.ParameterValues_list parameterValues)

Set method for parameterValues

Specified by:

setParameterValues in interface org.biomage.Interface.HasParameterValues

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getParameterValues

public org.biomage.Interface.HasParameterValues.ParameterValues_list getParameterValues()

Get method for parameterValues

Specified by:

getParameterValues in interface org.biomage.Interface.HasParameterValues

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addToParameterValues

public void addToParameterValues(ParameterValue parameterValue)

Method to add ParameterValue to ParameterValues_list

Specified by:

addToParameterValues in interface org.biomage.Interface.HasParameterValues

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addToParameterValues

public void addToParameterValues(int position,
                                 ParameterValue parameterValue)

Method to add ParameterValue at position to ParameterValues_list

Specified by:

addToParameterValues in interface org.biomage.Interface.HasParameterValues

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getFromParameterValues

public ParameterValue getFromParameterValues(int position)

Method to get ParameterValue from ParameterValues_list

Specified by:

getFromParameterValues in interface org.biomage.Interface.HasParameterValues

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removeElementAtFromParameterValues

public void removeElementAtFromParameterValues(int position)

Method to remove by position from ParameterValues_list

Specified by:

removeElementAtFromParameterValues in interface org.biomage.Interface.HasParameterValues

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removeFromParameterValues

public void removeFromParameterValues(ParameterValue parameterValue)

Method to remove first ParameterValue from ParameterValues_list

Specified by:

removeFromParameterValues in interface org.biomage.Interface.HasParameterValues

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ Protocol overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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