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org.biomage.QuantitationType
Class ConfidenceIndicator  

java.lang.Object
  org.biomage.Common.Extendable
      org.biomage.Common.Describable
          org.biomage.Common.Identifiable
              org.biomage.QuantitationType.QuantitationType
                  org.biomage.QuantitationType.StandardQuantitationType
                      org.biomage.QuantitationType.ConfidenceIndicator

All Implemented Interfaces:

org.biomage.Interface.HasAuditTrail, org.biomage.Interface.HasChannel, org.biomage.Interface.HasConfidenceIndicators, org.biomage.Interface.HasDataType, org.biomage.Interface.HasDescriptions, org.biomage.Interface.HasPropertySets, org.biomage.Interface.HasScale, org.biomage.Interface.HasSecurity, org.biomage.Interface.HasTargetQuantitationType, java.io.Serializable

Direct Known Subclasses:

Error, ExpectedValue, PValue

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public abstract class ConfidenceIndicator

extends StandardQuantitationType

implements java.io.Serializable, org.biomage.Interface.HasTargetQuantitationType

Indication of some measure of confidence for a standard quantitation type.

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Nested Class Summary

 

Nested classes inherited from class org.biomage.Interface.HasConfidenceIndicators

org.biomage.Interface.HasConfidenceIndicators.ConfidenceIndicators_list

 

Nested classes inherited from class org.biomage.Interface.HasAuditTrail

org.biomage.Interface.HasAuditTrail.AuditTrail_list

 

Nested classes inherited from class org.biomage.Interface.HasDescriptions

org.biomage.Interface.HasDescriptions.Descriptions_list

 

Nested classes inherited from class org.biomage.Interface.HasPropertySets

org.biomage.Interface.HasPropertySets.PropertySets_list

 

Field Summary
private  QuantitationType	targetQuantitationType           The association between a ConfidenceIndicator and the QuantitationType its is an indicator for.

 

Fields inherited from class org.biomage.QuantitationType.QuantitationType

isBackground

 

Fields inherited from class org.biomage.Common.Identifiable

 

Fields inherited from class org.biomage.Common.Describable

 

Fields inherited from class org.biomage.Common.Extendable

 

Constructor Summary

ConfidenceIndicator()           Default constructor.

ConfidenceIndicator(org.xml.sax.Attributes atts)           Attribute constructor.

 

Method Summary
QuantitationType	getTargetQuantitationType()           Get method for targetQuantitationType
void	setTargetQuantitationType(QuantitationType targetQuantitationType)           Set method for targetQuantitationType
void	writeAssociations(java.io.Writer out)           writeAssociations
void	writeAttributes(java.io.Writer out)           writeAttributes
void	writeMAGEML(java.io.Writer out)           writeMAGEML

 

Methods inherited from class org.biomage.QuantitationType.QuantitationType

addToConfidenceIndicators, addToConfidenceIndicators, getChannel, getConfidenceIndicators, getDataType, getFromConfidenceIndicators, getIsBackground, getScale, removeElementAtFromConfidenceIndicators, removeFromConfidenceIndicators, setChannel, setConfidenceIndicators, setDataType, setIsBackground, setScale

 

Methods inherited from class org.biomage.Common.Identifiable

getIdentifier, getName, setIdentifier, setName

 

Methods inherited from class org.biomage.Common.Describable

addToAuditTrail, addToAuditTrail, addToDescriptions, addToDescriptions, getAuditTrail, getDescriptions, getFromAuditTrail, getFromDescriptions, getSecurity, removeElementAtFromAuditTrail, removeElementAtFromDescriptions, removeFromAuditTrail, removeFromDescriptions, setAuditTrail, setDescriptions, setSecurity

 

Methods inherited from class org.biomage.Common.Extendable

addToPropertySets, addToPropertySets, getFromPropertySets, getPropertySets, removeElementAtFromPropertySets, removeFromPropertySets, setPropertySets

 

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

 

Field Detail

targetQuantitationType

private QuantitationType targetQuantitationType

The association between a ConfidenceIndicator and the QuantitationType its is an indicator for.

Constructor Detail

ConfidenceIndicator

public ConfidenceIndicator()

Default constructor.

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ConfidenceIndicator

public ConfidenceIndicator(org.xml.sax.Attributes atts)

Attribute constructor. Looks up the attributes in the parameter and casts them from strings appropriately

Method Detail

writeMAGEML

public void writeMAGEML(java.io.Writer out)
                 throws java.io.IOException

writeMAGEML

This method is responsible for assembling the attribute and association data into XML. It creates the object tag and then calls the writeAttributes and writeAssociation methods.

Overrides:

writeMAGEML in class StandardQuantitationType

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writeAttributes

public void writeAttributes(java.io.Writer out)
                     throws java.io.IOException

writeAttributes

This method is responsible for assembling the attribute data into XML. It calls the super method to write out all attributes of this class and it's ancestors.

Overrides:

writeAttributes in class StandardQuantitationType

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writeAssociations

public void writeAssociations(java.io.Writer out)
                       throws java.io.IOException

writeAssociations

This method is responsible for assembling the association data into XML. It calls the super method to write out all associations of this class's ancestors.

Overrides:

writeAssociations in class StandardQuantitationType

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setTargetQuantitationType

public void setTargetQuantitationType(QuantitationType targetQuantitationType)

Set method for targetQuantitationType

Specified by:

setTargetQuantitationType in interface org.biomage.Interface.HasTargetQuantitationType

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getTargetQuantitationType

public QuantitationType getTargetQuantitationType()

Get method for targetQuantitationType

Specified by:

getTargetQuantitationType in interface org.biomage.Interface.HasTargetQuantitationType

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> biomage >> [ QuantitationType overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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