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A
- addToConfidenceIndicator_list(ConfidenceIndicator) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add ConfidenceIndicator to ConfidenceIndicator_list
- addToConfidenceIndicator_list(int, ConfidenceIndicator) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add ConfidenceIndicator at position to ConfidenceIndicator_list
- addToConfidenceIndicators(ConfidenceIndicator) - Method in class org.biomage.QuantitationType.QuantitationType
- Method to add ConfidenceIndicator to ConfidenceIndicators_list
- addToConfidenceIndicators(int, ConfidenceIndicator) - Method in class org.biomage.QuantitationType.QuantitationType
- Method to add ConfidenceIndicator at position to ConfidenceIndicators_list
- addToDerivedSignal_list(DerivedSignal) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add DerivedSignal to DerivedSignal_list
- addToDerivedSignal_list(int, DerivedSignal) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add DerivedSignal at position to DerivedSignal_list
- addToError_list(Error) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add Error to Error_list
- addToError_list(int, Error) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add Error at position to Error_list
- addToExpectedValue_list(ExpectedValue) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add ExpectedValue to ExpectedValue_list
- addToExpectedValue_list(int, ExpectedValue) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add ExpectedValue at position to ExpectedValue_list
- addToMeasuredSignal_list(MeasuredSignal) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add MeasuredSignal to MeasuredSignal_list
- addToMeasuredSignal_list(int, MeasuredSignal) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add MeasuredSignal at position to MeasuredSignal_list
- addToPValue_list(PValue) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add PValue to PValue_list
- addToPValue_list(int, PValue) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add PValue at position to PValue_list
- addToPresentAbsent_list(PresentAbsent) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add PresentAbsent to PresentAbsent_list
- addToPresentAbsent_list(int, PresentAbsent) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add PresentAbsent at position to PresentAbsent_list
- addToQuantitationType_list(QuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add QuantitationType to QuantitationType_list
- addToQuantitationType_list(int, QuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add QuantitationType at position to QuantitationType_list
- addToRatio_list(Ratio) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add Ratio to Ratio_list
- addToRatio_list(int, Ratio) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add Ratio at position to Ratio_list
- addToSpecializedQuantitationType_list(SpecializedQuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add SpecializedQuantitationType to SpecializedQuantitationType_list
- addToSpecializedQuantitationType_list(int, SpecializedQuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add SpecializedQuantitationType at position to SpecializedQuantitationType_list
- addToStandardQuantitationType_list(StandardQuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add StandardQuantitationType to StandardQuantitationType_list
- addToStandardQuantitationType_list(int, StandardQuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to add StandardQuantitationType at position to StandardQuantitationType_list
C
- ConfidenceIndicator - class org.biomage.QuantitationType.ConfidenceIndicator.
- Indication of some measure of confidence for a standard quantitation type.
- ConfidenceIndicator() - Constructor for class org.biomage.QuantitationType.ConfidenceIndicator
- Default constructor.
- ConfidenceIndicator(Attributes) - Constructor for class org.biomage.QuantitationType.ConfidenceIndicator
- Attribute constructor.
- channel - Variable in class org.biomage.QuantitationType.QuantitationType
- The optional channel associated with the QuantitationType.
- confidenceIndicator_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- Indication of some measure of confidence for a standard quantitation type.
- confidenceIndicators - Variable in class org.biomage.QuantitationType.QuantitationType
- The association between a ConfidenceIndicator and the QuantitationType its is an indicator for.
D
- DerivedSignal - class org.biomage.QuantitationType.DerivedSignal.
- A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements.
- DerivedSignal() - Constructor for class org.biomage.QuantitationType.DerivedSignal
- Default constructor.
- DerivedSignal(Attributes) - Constructor for class org.biomage.QuantitationType.DerivedSignal
- Attribute constructor.
- dataType - Variable in class org.biomage.QuantitationType.QuantitationType
- The specific type for the quantitations.
- derivedSignal_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- A calculated measurement of the intensity of a signal, for example, after a transformation involving normalization and/or replicate DesignElements.
E
- Error - class org.biomage.QuantitationType.Error.
- Error measurement of a quantitation.
- Error() - Constructor for class org.biomage.QuantitationType.Error
- Default constructor.
- Error(Attributes) - Constructor for class org.biomage.QuantitationType.Error
- Attribute constructor.
- ExpectedValue - class org.biomage.QuantitationType.ExpectedValue.
- Indication of what value is expected of the associated standard quantitation type.
- ExpectedValue() - Constructor for class org.biomage.QuantitationType.ExpectedValue
- Default constructor.
- ExpectedValue(Attributes) - Constructor for class org.biomage.QuantitationType.ExpectedValue
- Attribute constructor.
- error_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- Error measurement of a quantitation.
- expectedValue_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- Indication of what value is expected of the associated standard quantitation type.
G
- getChannel() - Method in class org.biomage.QuantitationType.QuantitationType
- Get method for channel
- getConfidenceIndicator_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for confidenceIndicator_list
- getConfidenceIndicators() - Method in class org.biomage.QuantitationType.QuantitationType
- Get method for confidenceIndicators
- getDataType() - Method in class org.biomage.QuantitationType.QuantitationType
- Get method for dataType
- getDerivedSignal_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for derivedSignal_list
- getError_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for error_list
- getExpectedValue_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for expectedValue_list
- getFromConfidenceIndicator_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get ConfidenceIndicator from ConfidenceIndicator_list
- getFromConfidenceIndicators(int) - Method in class org.biomage.QuantitationType.QuantitationType
- Method to get ConfidenceIndicator from ConfidenceIndicators_list
- getFromDerivedSignal_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get DerivedSignal from DerivedSignal_list
- getFromError_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get Error from Error_list
- getFromExpectedValue_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get ExpectedValue from ExpectedValue_list
- getFromMeasuredSignal_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get MeasuredSignal from MeasuredSignal_list
- getFromPValue_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get PValue from PValue_list
- getFromPresentAbsent_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get PresentAbsent from PresentAbsent_list
- getFromQuantitationType_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get QuantitationType from QuantitationType_list
- getFromRatio_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get Ratio from Ratio_list
- getFromSpecializedQuantitationType_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get SpecializedQuantitationType from SpecializedQuantitationType_list
- getFromStandardQuantitationType_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to get StandardQuantitationType from StandardQuantitationType_list
- getIsBackground() - Method in class org.biomage.QuantitationType.QuantitationType
- Get method for isBackground
- getMeasuredSignal_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for measuredSignal_list
- getPValue_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for pValue_list
- getPresentAbsent_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for presentAbsent_list
- getQuantitationType_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for quantitationType_list
- getRatio_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for ratio_list
- getScale() - Method in class org.biomage.QuantitationType.QuantitationType
- Get method for scale
- getSpecializedQuantitationType_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for specializedQuantitationType_list
- getStandardQuantitationType_list() - Method in class org.biomage.QuantitationType.QuantitationType_package
- Get method for standardQuantitationType_list
- getTargetQuantitationType() - Method in class org.biomage.QuantitationType.ConfidenceIndicator
- Get method for targetQuantitationType
I
- isBackground - Variable in class org.biomage.QuantitationType.QuantitationType
- Indicates whether the quantitation has been measured from the background or from the feature itself.
M
- MeasuredSignal - class org.biomage.QuantitationType.MeasuredSignal.
- Best measure from feature extraction as to the presence and intensity of the signal.
- MeasuredSignal() - Constructor for class org.biomage.QuantitationType.MeasuredSignal
- Default constructor.
- MeasuredSignal(Attributes) - Constructor for class org.biomage.QuantitationType.MeasuredSignal
- Attribute constructor.
- measuredSignal_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- Best measure from feature extraction as to the presence and intensity of the signal.
O
- org.biomage.QuantitationType - package org.biomage.QuantitationType
P
- PValue - class org.biomage.QuantitationType.PValue.
- Measurement of the accuracy of a quantitation.
- PValue() - Constructor for class org.biomage.QuantitationType.PValue
- Default constructor.
- PValue(Attributes) - Constructor for class org.biomage.QuantitationType.PValue
- Attribute constructor.
- PresentAbsent - class org.biomage.QuantitationType.PresentAbsent.
- Indicates relative presence or absence.
- PresentAbsent() - Constructor for class org.biomage.QuantitationType.PresentAbsent
- Default constructor.
- PresentAbsent(Attributes) - Constructor for class org.biomage.QuantitationType.PresentAbsent
- Attribute constructor.
- pValue_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- Measurement of the accuracy of a quantitation.
- presentAbsent_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- Indicates relative presence or absence.
Q
- QuantitationType - class org.biomage.QuantitationType.QuantitationType.
- A method for calculating a single datum of the matrix (e.g.
- QuantitationType() - Constructor for class org.biomage.QuantitationType.QuantitationType
- Default constructor.
- QuantitationType(Attributes) - Constructor for class org.biomage.QuantitationType.QuantitationType
- Attribute constructor.
- QuantitationType_package - class org.biomage.QuantitationType.QuantitationType_package.
- This Package defines the classes for quantitations, such as measured and derived signal, error, and pvalue.
- QuantitationType_package() - Constructor for class org.biomage.QuantitationType.QuantitationType_package
- Default constructor.
- QuantitationType_package(Attributes) - Constructor for class org.biomage.QuantitationType.QuantitationType_package
- Attribute constructor.
- QuantitationType_package.ConfidenceIndicator_list - class org.biomage.QuantitationType.QuantitationType_package.ConfidenceIndicator_list.
- Inner list class for holding multiple entries for attribute confidenceIndicator_list.
- QuantitationType_package.ConfidenceIndicator_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.ConfidenceIndicator_list
- QuantitationType_package.DerivedSignal_list - class org.biomage.QuantitationType.QuantitationType_package.DerivedSignal_list.
- Inner list class for holding multiple entries for attribute derivedSignal_list.
- QuantitationType_package.DerivedSignal_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.DerivedSignal_list
- QuantitationType_package.Error_list - class org.biomage.QuantitationType.QuantitationType_package.Error_list.
- Inner list class for holding multiple entries for attribute error_list.
- QuantitationType_package.Error_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.Error_list
- QuantitationType_package.ExpectedValue_list - class org.biomage.QuantitationType.QuantitationType_package.ExpectedValue_list.
- Inner list class for holding multiple entries for attribute expectedValue_list.
- QuantitationType_package.ExpectedValue_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.ExpectedValue_list
- QuantitationType_package.MeasuredSignal_list - class org.biomage.QuantitationType.QuantitationType_package.MeasuredSignal_list.
- Inner list class for holding multiple entries for attribute measuredSignal_list.
- QuantitationType_package.MeasuredSignal_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.MeasuredSignal_list
- QuantitationType_package.PValue_list - class org.biomage.QuantitationType.QuantitationType_package.PValue_list.
- Inner list class for holding multiple entries for attribute pValue_list.
- QuantitationType_package.PValue_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.PValue_list
- QuantitationType_package.PresentAbsent_list - class org.biomage.QuantitationType.QuantitationType_package.PresentAbsent_list.
- Inner list class for holding multiple entries for attribute presentAbsent_list.
- QuantitationType_package.PresentAbsent_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.PresentAbsent_list
- QuantitationType_package.QuantitationType_list - class org.biomage.QuantitationType.QuantitationType_package.QuantitationType_list.
- Inner list class for holding multiple entries for attribute quantitationType_list.
- QuantitationType_package.QuantitationType_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.QuantitationType_list
- QuantitationType_package.Ratio_list - class org.biomage.QuantitationType.QuantitationType_package.Ratio_list.
- Inner list class for holding multiple entries for attribute ratio_list.
- QuantitationType_package.Ratio_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.Ratio_list
- QuantitationType_package.SpecializedQuantitationType_list - class org.biomage.QuantitationType.QuantitationType_package.SpecializedQuantitationType_list.
- Inner list class for holding multiple entries for attribute specializedQuantitationType_list.
- QuantitationType_package.SpecializedQuantitationType_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.SpecializedQuantitationType_list
- QuantitationType_package.StandardQuantitationType_list - class org.biomage.QuantitationType.QuantitationType_package.StandardQuantitationType_list.
- Inner list class for holding multiple entries for attribute standardQuantitationType_list.
- QuantitationType_package.StandardQuantitationType_list() - Constructor for class org.biomage.QuantitationType.QuantitationType_package.StandardQuantitationType_list
- quantitationType_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- A method for calculating a single datum of the matrix (e.g.
R
- Ratio - class org.biomage.QuantitationType.Ratio.
- The ratio of two or more signals, typically between two channels.
- Ratio() - Constructor for class org.biomage.QuantitationType.Ratio
- Default constructor.
- Ratio(Attributes) - Constructor for class org.biomage.QuantitationType.Ratio
- Attribute constructor.
- ratio_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- The ratio of two or more signals, typically between two channels.
- removeElementAtFromConfidenceIndicator_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from ConfidenceIndicator_list
- removeElementAtFromConfidenceIndicators(int) - Method in class org.biomage.QuantitationType.QuantitationType
- Method to remove by position from ConfidenceIndicators_list
- removeElementAtFromDerivedSignal_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from DerivedSignal_list
- removeElementAtFromError_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from Error_list
- removeElementAtFromExpectedValue_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from ExpectedValue_list
- removeElementAtFromMeasuredSignal_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from MeasuredSignal_list
- removeElementAtFromPValue_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from PValue_list
- removeElementAtFromPresentAbsent_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from PresentAbsent_list
- removeElementAtFromQuantitationType_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from QuantitationType_list
- removeElementAtFromRatio_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from Ratio_list
- removeElementAtFromSpecializedQuantitationType_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from SpecializedQuantitationType_list
- removeElementAtFromStandardQuantitationType_list(int) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove by position from StandardQuantitationType_list
- removeFromConfidenceIndicator_list(ConfidenceIndicator) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first ConfidenceIndicator from ConfidenceIndicator_list
- removeFromConfidenceIndicators(ConfidenceIndicator) - Method in class org.biomage.QuantitationType.QuantitationType
- Method to remove first ConfidenceIndicator from ConfidenceIndicators_list
- removeFromDerivedSignal_list(DerivedSignal) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first DerivedSignal from DerivedSignal_list
- removeFromError_list(Error) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first Error from Error_list
- removeFromExpectedValue_list(ExpectedValue) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first ExpectedValue from ExpectedValue_list
- removeFromMeasuredSignal_list(MeasuredSignal) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first MeasuredSignal from MeasuredSignal_list
- removeFromPValue_list(PValue) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first PValue from PValue_list
- removeFromPresentAbsent_list(PresentAbsent) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first PresentAbsent from PresentAbsent_list
- removeFromQuantitationType_list(QuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first QuantitationType from QuantitationType_list
- removeFromRatio_list(Ratio) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first Ratio from Ratio_list
- removeFromSpecializedQuantitationType_list(SpecializedQuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first SpecializedQuantitationType from SpecializedQuantitationType_list
- removeFromStandardQuantitationType_list(StandardQuantitationType) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Method to remove first StandardQuantitationType from StandardQuantitationType_list
S
- SpecializedQuantitationType - class org.biomage.QuantitationType.SpecializedQuantitationType.
- User defined quantitation type.
- SpecializedQuantitationType() - Constructor for class org.biomage.QuantitationType.SpecializedQuantitationType
- Default constructor.
- SpecializedQuantitationType(Attributes) - Constructor for class org.biomage.QuantitationType.SpecializedQuantitationType
- Attribute constructor.
- StandardQuantitationType - class org.biomage.QuantitationType.StandardQuantitationType.
- Superclass for the named quantitation type.
- StandardQuantitationType() - Constructor for class org.biomage.QuantitationType.StandardQuantitationType
- Default constructor.
- StandardQuantitationType(Attributes) - Constructor for class org.biomage.QuantitationType.StandardQuantitationType
- Attribute constructor.
- scale - Variable in class org.biomage.QuantitationType.QuantitationType
- Indication of how to interpret the value.
- setChannel(Channel) - Method in class org.biomage.QuantitationType.QuantitationType
- Set method for channel
- setConfidenceIndicator_list(QuantitationType_package.ConfidenceIndicator_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for confidenceIndicator_list
- setConfidenceIndicators(HasConfidenceIndicators.ConfidenceIndicators_list) - Method in class org.biomage.QuantitationType.QuantitationType
- Set method for confidenceIndicators
- setDataType(OntologyEntry) - Method in class org.biomage.QuantitationType.QuantitationType
- Set method for dataType
- setDerivedSignal_list(QuantitationType_package.DerivedSignal_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for derivedSignal_list
- setError_list(QuantitationType_package.Error_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for error_list
- setExpectedValue_list(QuantitationType_package.ExpectedValue_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for expectedValue_list
- setIsBackground(boolean) - Method in class org.biomage.QuantitationType.QuantitationType
- Set method for isBackground
- setMeasuredSignal_list(QuantitationType_package.MeasuredSignal_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for measuredSignal_list
- setPValue_list(QuantitationType_package.PValue_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for pValue_list
- setPresentAbsent_list(QuantitationType_package.PresentAbsent_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for presentAbsent_list
- setQuantitationType_list(QuantitationType_package.QuantitationType_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for quantitationType_list
- setRatio_list(QuantitationType_package.Ratio_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for ratio_list
- setScale(OntologyEntry) - Method in class org.biomage.QuantitationType.QuantitationType
- Set method for scale
- setSpecializedQuantitationType_list(QuantitationType_package.SpecializedQuantitationType_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for specializedQuantitationType_list
- setStandardQuantitationType_list(QuantitationType_package.StandardQuantitationType_list) - Method in class org.biomage.QuantitationType.QuantitationType_package
- Set method for standardQuantitationType_list
- setTargetQuantitationType(QuantitationType) - Method in class org.biomage.QuantitationType.ConfidenceIndicator
- Set method for targetQuantitationType
- specializedQuantitationType_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- User defined quantitation type.
- standardQuantitationType_list - Variable in class org.biomage.QuantitationType.QuantitationType_package
- Superclass for the named quantitation type.
T
- targetQuantitationType - Variable in class org.biomage.QuantitationType.ConfidenceIndicator
- The association between a ConfidenceIndicator and the QuantitationType its is an indicator for.
W
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.ConfidenceIndicator
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.DerivedSignal
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.Error
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.ExpectedValue
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.MeasuredSignal
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.PValue
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.PresentAbsent
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.QuantitationType
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.QuantitationType_package
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.Ratio
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.SpecializedQuantitationType
- writeAssociations
- writeAssociations(Writer) - Method in class org.biomage.QuantitationType.StandardQuantitationType
- writeAssociations
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.ConfidenceIndicator
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.DerivedSignal
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.Error
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.ExpectedValue
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.MeasuredSignal
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.PValue
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.PresentAbsent
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.QuantitationType
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.QuantitationType_package
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.Ratio
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.SpecializedQuantitationType
- writeAttributes
- writeAttributes(Writer) - Method in class org.biomage.QuantitationType.StandardQuantitationType
- writeAttributes
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.ConfidenceIndicator
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.DerivedSignal
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.Error
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.ExpectedValue
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.MeasuredSignal
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.PValue
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.PresentAbsent
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.QuantitationType
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.QuantitationType_package
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.Ratio
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.SpecializedQuantitationType
- writeMAGEML
- writeMAGEML(Writer) - Method in class org.biomage.QuantitationType.StandardQuantitationType
- writeMAGEML
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