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A
- applicationname - Variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
C
- cleanUpConcreteTask() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
- createProcessor(String, ScuflModel) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
- Create a new SoaplabProcessor and add it to the model
E
- elementForProcessor(Processor) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabXMLHandler
- endpoint - Variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
- endpoint - Variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
- execute(Map) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
G
- generatePorts() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
- Use the endpoint data to create new ports and attach them to the processor.
- getDescriptionText() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
- Use the endpoint data to set the description field
- getEndpoint() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
- Get the URL for this endpoint
- getListener(ScavengerTree) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerHelper
- getProcessorClass() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
- Return the Class object for processors that would be created by this factory
- getProcessorDescription() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
- Return a textual description of the factory
- getProperties() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
- Get the properties for this processor for display purposes
- getProvenance() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
- Retrieve provenance information for this task, concrete tasks should overide this method and provide this information as an XML JDOM element
- getScavengerDescription() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerHelper
I
- INVOCATION_TIMEOUT - Static variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
L
- loadProcessorFromXML(Element, ScuflModel, String) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabXMLHandler
- logger - Static variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
O
- org.embl.ebi.escience.scuflworkers.soaplab - package org.embl.ebi.escience.scuflworkers.soaplab
S
- SoaplabProcessor - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor.
- A processor based on the Soaplab web service around the EMBOSS tools.
- SoaplabProcessor(ScuflModel, String, String) - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
- Construct a new processor with the given model and name, delegates to the superclass.
- SoaplabProcessorFactory - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory.
- Implementation of ProcessorFactory that creates SoaplabProcessor nodes
- SoaplabProcessorFactory(String, String) - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
- Create a new factory configured with the specified endpoint base and application name, which will be concatenated to produce the endpoint URL.
- SoaplabScavenger - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavenger.
- A Scavenger that knows how to get all the Soaplab services from a specified installation
- SoaplabScavenger(String) - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavenger
- Create a new Soaplab scavenger, the base parameter should be the base URL of the Soaplab service, i.e.
- SoaplabScavengerHelper - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerHelper.
- Helper for handling Soaplab scavengers.
- SoaplabScavengerHelper() - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerHelper
- SoaplabTask - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask.
- SoaplabTask(String, Processor, LogLevel, String, String) - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
- SoaplabXMLHandler - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabXMLHandler.
- Handles XML store and load for the soaplab processor
- SoaplabXMLHandler() - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabXMLHandler
- setEndpoint(String) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
- Set the endpoint for this soaplab processor
T
- toString() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
- Return the application name as the toString result
A C E G I L O S T
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