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A C E G I L O S T

A

applicationname - Variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
 

C

cleanUpConcreteTask() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
 
createProcessor(String, ScuflModel) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
Create a new SoaplabProcessor and add it to the model

E

elementForProcessor(Processor) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabXMLHandler
 
endpoint - Variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
 
endpoint - Variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
 
execute(Map) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
 

G

generatePorts() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
Use the endpoint data to create new ports and attach them to the processor.
getDescriptionText() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
Use the endpoint data to set the description field
getEndpoint() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
Get the URL for this endpoint
getListener(ScavengerTree) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerHelper
 
getProcessorClass() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
Return the Class object for processors that would be created by this factory
getProcessorDescription() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
Return a textual description of the factory
getProperties() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
Get the properties for this processor for display purposes
getProvenance() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
Retrieve provenance information for this task, concrete tasks should overide this method and provide this information as an XML JDOM element
getScavengerDescription() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerHelper
 

I

INVOCATION_TIMEOUT - Static variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
 

L

loadProcessorFromXML(Element, ScuflModel, String) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabXMLHandler
 
logger - Static variable in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
 

O

org.embl.ebi.escience.scuflworkers.soaplab - package org.embl.ebi.escience.scuflworkers.soaplab
 

S

SoaplabProcessor - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor.
A processor based on the Soaplab web service around the EMBOSS tools.
SoaplabProcessor(ScuflModel, String, String) - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
Construct a new processor with the given model and name, delegates to the superclass.
SoaplabProcessorFactory - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory.
Implementation of ProcessorFactory that creates SoaplabProcessor nodes
SoaplabProcessorFactory(String, String) - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
Create a new factory configured with the specified endpoint base and application name, which will be concatenated to produce the endpoint URL.
SoaplabScavenger - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavenger.
A Scavenger that knows how to get all the Soaplab services from a specified installation
SoaplabScavenger(String) - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavenger
Create a new Soaplab scavenger, the base parameter should be the base URL of the Soaplab service, i.e.
SoaplabScavengerHelper - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerHelper.
Helper for handling Soaplab scavengers.
SoaplabScavengerHelper() - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabScavengerHelper
 
SoaplabTask - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask.
 
SoaplabTask(String, Processor, LogLevel, String, String) - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabTask
 
SoaplabXMLHandler - class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabXMLHandler.
Handles XML store and load for the soaplab processor
SoaplabXMLHandler() - Constructor for class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabXMLHandler
 
setEndpoint(String) - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessor
Set the endpoint for this soaplab processor

T

toString() - Method in class org.embl.ebi.escience.scuflworkers.soaplab.SoaplabProcessorFactory
Return the application name as the toString result

A C E G I L O S T