- All Superinterfaces:
- AttributeConvention, AttributeDictRef, AttributeId, AttributeTitle, org.w3c.dom.Element, org.w3c.dom.Node
- All Known Subinterfaces:
- AbstractAngle, AbstractAtom, AbstractAtomRef, AbstractBond, AbstractBuiltinContainer, AbstractNumericVal, AbstractStringVal, CML, CMLAngle, CMLAtom, CMLAtomArray, CMLAtomParity, CMLBond, CMLBondArray, CMLBondStereo, CMLCrystal, CMLElectron, CMLFeature, CMLFloatArray, CMLFloatMatrix, CMLFloatVal, CMLFormula, CMLIntegerArray, CMLIntegerVal, CMLLink, CMLList, CMLMolecule, CMLReaction, CMLSequence, CMLStringArray, CMLStringVal, CMLTorsion
- public interface AbstractBase
- extends org.w3c.dom.Element, AttributeTitle, AttributeDictRef, AttributeId, AttributeConvention
The base class for all elementObjects mentioned in the CML
DTD.
Any CML element may have attributes:
- title
- id
- dictRef
- convention
and convenience get/set methods are provided for all, through
the interfaces AttributeTitle, AttributeId and AttributeConvention.
An element (FOO) subclassed from a AbstractBase may be constructed in the
following ways:
- FOO(). Creates a new empty element with null values of the
attributes. Required for newInstance(), but use carefully since
it has no tagName and no document associated with it.
- FOO(String tagName, Document document). Creates an empty
element with null attribute names.
- FOO(org.w3c.dom.Element element). Creates a subclassed Element with
the same attribute values as the input Element. Used when a DOM has
been created with non-CML-aware software. The routine
makeAndProcessSubclass(Element element) will replace the current Element
with the appropriate CML subclass.
- FOO(String title, String id, String dictRef, String conventionName).
Makes subclassed Element and sets attribute values.
| Fields inherited from interface org.w3c.dom.Node |
ATTRIBUTE_NODE, CDATA_SECTION_NODE, COMMENT_NODE, DOCUMENT_FRAGMENT_NODE, DOCUMENT_NODE, DOCUMENT_POSITION_CONTAINED_BY, DOCUMENT_POSITION_CONTAINS, DOCUMENT_POSITION_DISCONNECTED, DOCUMENT_POSITION_FOLLOWING, DOCUMENT_POSITION_IMPLEMENTATION_SPECIFIC, DOCUMENT_POSITION_PRECEDING, DOCUMENT_TYPE_NODE, ELEMENT_NODE, ENTITY_NODE, ENTITY_REFERENCE_NODE, NOTATION_NODE, PROCESSING_INSTRUCTION_NODE, TEXT_NODE |
| Methods inherited from interface org.w3c.dom.Element |
getAttribute, getAttributeNode, getAttributeNodeNS, getAttributeNS, getElementsByTagName, getElementsByTagNameNS, getSchemaTypeInfo, getTagName, hasAttribute, hasAttributeNS, removeAttribute, removeAttributeNode, removeAttributeNS, setAttribute, setAttributeNode, setAttributeNodeNS, setAttributeNS, setIdAttribute, setIdAttributeNode, setIdAttributeNS |
| Methods inherited from interface org.w3c.dom.Node |
appendChild, cloneNode, compareDocumentPosition, getAttributes, getBaseURI, getChildNodes, getFeature, getFirstChild, getLastChild, getLocalName, getNamespaceURI, getNextSibling, getNodeName, getNodeType, getNodeValue, getOwnerDocument, getParentNode, getPrefix, getPreviousSibling, getTextContent, getUserData, hasAttributes, hasChildNodes, insertBefore, isDefaultNamespace, isEqualNode, isSameNode, isSupported, lookupNamespaceURI, lookupPrefix, normalize, removeChild, replaceChild, setNodeValue, setPrefix, setTextContent, setUserData |
PACKAGE_NAME
public static final java.lang.String PACKAGE_NAME
- See Also:
- Constant Field Values
NAMESPACE_URI
public static final java.lang.String NAMESPACE_URI
- See Also:
- Constant Field Values
CML_PREFIX
public static final java.lang.String CML_PREFIX
- See Also:
- Constant Field Values
UNK_ELEM
public static final int UNK_ELEM
- See Also:
- Constant Field Values
ELEMENT_NAMES
public static final java.lang.String[] ELEMENT_NAMES
UNK
public static final int UNK
- See Also:
- Constant Field Values
ANGLE
public static final int ANGLE
- See Also:
- Constant Field Values
ATOM
public static final int ATOM
- See Also:
- Constant Field Values
ATOMARRAY
public static final int ATOMARRAY
- See Also:
- Constant Field Values
BOND
public static final int BOND
- See Also:
- Constant Field Values
BONDARRAY
public static final int BONDARRAY
- See Also:
- Constant Field Values
CML
public static final int CML
- See Also:
- Constant Field Values
CRYSTAL
public static final int CRYSTAL
- See Also:
- Constant Field Values
ELECTRON
public static final int ELECTRON
- See Also:
- Constant Field Values
EXECUTE
public static final int EXECUTE
- See Also:
- Constant Field Values
FEATURE
public static final int FEATURE
- See Also:
- Constant Field Values
FLOAT
public static final int FLOAT
- See Also:
- Constant Field Values
FLOATARRAY
public static final int FLOATARRAY
- See Also:
- Constant Field Values
FLOATMATRIX
public static final int FLOATMATRIX
- See Also:
- Constant Field Values
FORMULA
public static final int FORMULA
- See Also:
- Constant Field Values
INTEGER
public static final int INTEGER
- See Also:
- Constant Field Values
INTEGERARRAY
public static final int INTEGERARRAY
- See Also:
- Constant Field Values
LINK
public static final int LINK
- See Also:
- Constant Field Values
LIST
public static final int LIST
- See Also:
- Constant Field Values
MOLECULE
public static final int MOLECULE
- See Also:
- Constant Field Values
REACTION
public static final int REACTION
- See Also:
- Constant Field Values
SEQUENCE
public static final int SEQUENCE
- See Also:
- Constant Field Values
STRING
public static final int STRING
- See Also:
- Constant Field Values
STRINGARRAY
public static final int STRINGARRAY
- See Also:
- Constant Field Values
TORSION
public static final int TORSION
- See Also:
- Constant Field Values
ATOMPARITY
public static final int ATOMPARITY
- See Also:
- Constant Field Values
BONDSTEREO
public static final int BONDSTEREO
- See Also:
- Constant Field Values
ELEMENT_COUNT
public static final int ELEMENT_COUNT
- See Also:
- Constant Field Values
BUILTIN
public static final java.lang.String BUILTIN
- "builtin" attribute name
- See Also:
- Constant Field Values
UNKNOWN
public static final int UNKNOWN
- See Also:
- Constant Field Values
STRING_TYPE
public static final int STRING_TYPE
- See Also:
- Constant Field Values
FLOAT_TYPE
public static final int FLOAT_TYPE
- See Also:
- Constant Field Values
INTEGER_TYPE
public static final int INTEGER_TYPE
- See Also:
- Constant Field Values
processDOM
public boolean processDOM()
throws CMLException
- lazy implementations
setDOMNeedsProcessing
public void setDOMNeedsProcessing(boolean processMe)
updateDOM
public boolean updateDOM()
throws CMLException
setDOMNeedsUpdating
public void setDOMNeedsUpdating(boolean processMe)
readXMLTest
public void readXMLTest()
throws CMLException
- tests an element that has been read from an XML document. This
may be overridden in some or all subclasses
debug
public void debug(java.io.Writer w)
throws java.io.IOException
- output debug info to Writer and return String equivalent (e.g. with
new StringWriter(). Can be used for normal XML output
debug
public void debug()
- output debug info to System.out
addTracer
public void addTracer(java.lang.Class theClass)
- set a trace for objects of a class.
removeTracer
public void removeTracer(java.lang.Class theClass)
- remove a trace.for objects of a class
getDisplay
public java.awt.Component getDisplay()
- a graphical display for this object
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