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org.xmlcml.cml
Interface CMLBondArray  

All Superinterfaces:

AbstractBase, AbstractBond, AbstractBuiltinContainer, AttributeAtomRefs, AttributeConvention, AttributeDictRef, AttributeId, AttributeTitle, BuiltinArrayContainer, BuiltinContainer, org.w3c.dom.Element, org.w3c.dom.Node

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public interface CMLBondArray

extends AbstractBond, BuiltinArrayContainer

DTD Class
May become obsolete as bondArray is only syntactic

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Field Summary

 

Fields inherited from interface org.xmlcml.cml.AbstractBond

AROMATIC, ATOMREF, ATOMREF_NAME, ATOMREFS, ATOMREFS_NAME, BOND_BUILTIN_COUNT, BOND_FLOATVAL_COUNT, BOND_FLOATVAL_END, BOND_FLOATVAL_START, BOND_INTEGERVAL_COUNT, BOND_INTEGERVAL_END, BOND_INTEGERVAL_START, BOND_STRINGVAL_COUNT, BOND_STRINGVAL_END, BOND_STRINGVAL_START, BONDID, bondOrders, bondTypeStrings, builtinFloatValNames, builtinIntegerValNames, builtinStringValNames, CIS, DECREASE, DEFAULTXY2LENGTH, DEFAULTXYZ3LENGTH, DELETE, DOUBLE, HATCH, ID_NAME, INCREASE, LENGTH, LENGTH_NAME, NOSTEREO, ORDER, ORDER_NAME, OVERRUN, SINGLE, STEREO, STEREO_NAME, TRANS, TRIPLE, UNKNOWN, WEDGE, ZERO

 

Fields inherited from interface org.xmlcml.cml.AbstractBuiltinContainer

NONUNIQUE, STEREO_2D, STEREO_3D, STEREO_ANY, UNIQUE

 

Fields inherited from interface org.xmlcml.cml.AbstractBase

ANGLE, ATOM, ATOMARRAY, ATOMPARITY, BOND, BONDARRAY, BONDSTEREO, BUILTIN, CML, CML_PREFIX, CRYSTAL, ELECTRON, ELEMENT_COUNT, ELEMENT_NAMES, EXECUTE, FEATURE, FLOAT, FLOAT_TYPE, FLOATARRAY, FLOATMATRIX, FORMULA, INTEGER, INTEGER_TYPE, INTEGERARRAY, LINK, LIST, MOLECULE, NAMESPACE_URI, PACKAGE_NAME, REACTION, SEQUENCE, STRING, STRING_TYPE, STRINGARRAY, TORSION, UNK, UNK_ELEM

 

Fields inherited from interface org.w3c.dom.Node

ATTRIBUTE_NODE, CDATA_SECTION_NODE, COMMENT_NODE, DOCUMENT_FRAGMENT_NODE, DOCUMENT_NODE, DOCUMENT_POSITION_CONTAINED_BY, DOCUMENT_POSITION_CONTAINS, DOCUMENT_POSITION_DISCONNECTED, DOCUMENT_POSITION_FOLLOWING, DOCUMENT_POSITION_IMPLEMENTATION_SPECIFIC, DOCUMENT_POSITION_PRECEDING, DOCUMENT_TYPE_NODE, ELEMENT_NODE, ENTITY_NODE, ENTITY_REFERENCE_NODE, NOTATION_NODE, PROCESSING_INSTRUCTION_NODE, TEXT_NODE

 

Fields inherited from interface org.xmlcml.cml.AttributeTitle

TITLE

 

Fields inherited from interface org.xmlcml.cml.AttributeDictRef

DICTREF

 

Fields inherited from interface org.xmlcml.cml.AttributeId

ID

 

Fields inherited from interface org.xmlcml.cml.AttributeConvention

CONVENTION

 

Fields inherited from interface org.xmlcml.cml.AttributeAtomRefs

ATOM_REFS

 

Method Summary
void	add(CMLBond bond)           when an CMLBond is added then it is split over the various StringArrays
AbstractBuiltinContainer	createArrayElement(org.w3c.dom.Document document)
void	delete(CMLBond bond)
void	deleteNonBuiltinArray(java.lang.String name)
CMLBond	elementAt(int index)           when an CMLBond is extracted then it is combined from the various StringArrays
CMLStringArray	getBuiltinArray(int builtinId)           this is rather trick since CMLBondArray is subclasses from CMLBond and CMLStringArray from CMLStringVal we can extract the array object as scalars and simply cast them
CMLStringArray	getNonBuiltinArray(java.lang.String name)
void	setBuiltinArray(int builtinId, CMLStringArray array)
void	setNonBuiltinArray(java.lang.String name, CMLStringArray array)
int	size()

 

Methods inherited from interface org.xmlcml.cml.AbstractBuiltinContainer

addBuiltinChildWithFloatValue, addBuiltinChildWithIntegerValue, addBuiltinChildWithStringValue, checkBuiltins, deleteNonBuiltinVal, getBuiltinChild, getBuiltinChildElements, getBuiltinChildFloatValue, getBuiltinChildIntegerValue, getBuiltinChildStringValue, getBuiltinCount, getBuiltinVal, getNonBuiltinVal, removeBuiltinChild, setBuiltinFloatChild, setBuiltinIntegerChild, setBuiltinStringChild, setBuiltinVal, setNonBuiltinVal

 

Methods inherited from interface org.xmlcml.cml.AbstractBase

addTracer, debug, debug, getDisplay, processDOM, readXMLTest, removeTracer, setDOMNeedsProcessing, setDOMNeedsUpdating, updateDOM

 

Methods inherited from interface org.w3c.dom.Element

getAttribute, getAttributeNode, getAttributeNodeNS, getAttributeNS, getElementsByTagName, getElementsByTagNameNS, getSchemaTypeInfo, getTagName, hasAttribute, hasAttributeNS, removeAttribute, removeAttributeNode, removeAttributeNS, setAttribute, setAttributeNode, setAttributeNodeNS, setAttributeNS, setIdAttribute, setIdAttributeNode, setIdAttributeNS

 

Methods inherited from interface org.w3c.dom.Node

appendChild, cloneNode, compareDocumentPosition, getAttributes, getBaseURI, getChildNodes, getFeature, getFirstChild, getLastChild, getLocalName, getNamespaceURI, getNextSibling, getNodeName, getNodeType, getNodeValue, getOwnerDocument, getParentNode, getPrefix, getPreviousSibling, getTextContent, getUserData, hasAttributes, hasChildNodes, insertBefore, isDefaultNamespace, isEqualNode, isSameNode, isSupported, lookupNamespaceURI, lookupPrefix, normalize, removeChild, replaceChild, setNodeValue, setPrefix, setTextContent, setUserData

 

Methods inherited from interface org.xmlcml.cml.AttributeTitle

getTitle, processDOMHasTitle, setTitle, updateDOMHasTitle

 

Methods inherited from interface org.xmlcml.cml.AttributeDictRef

getDictRef, processDOMHasDictRef, setDictRef, updateDOMHasDictRef

 

Methods inherited from interface org.xmlcml.cml.AttributeId

getId, processDOMHasId, setId, updateDOMHasId

 

Methods inherited from interface org.xmlcml.cml.AttributeConvention

getConventionName, processDOMHasConvention, setConventionName, updateDOMHasConvention

 

Methods inherited from interface org.xmlcml.cml.AttributeAtomRefs

addAtomRef, deleteAtomRef, getAtomRef, getAtomRefVector, getMolecule, processDOMHasAtomRefs, updateDOMHasAtomRefs

 

Method Detail

add

public void add(CMLBond bond)

when an CMLBond is added then it is split over the various StringArrays

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size

public int size()

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elementAt

public CMLBond elementAt(int index)

when an CMLBond is extracted then it is combined from the various StringArrays

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delete

public void delete(CMLBond bond)

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getBuiltinArray

public CMLStringArray getBuiltinArray(int builtinId)

this is rather trick since CMLBondArray is subclasses from CMLBond and CMLStringArray from CMLStringVal we can extract the array object as scalars and simply cast them

Specified by:

getBuiltinArray in interface BuiltinArrayContainer

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setBuiltinArray

public void setBuiltinArray(int builtinId,
                            CMLStringArray array)

Specified by:

setBuiltinArray in interface BuiltinArrayContainer

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getNonBuiltinArray

public CMLStringArray getNonBuiltinArray(java.lang.String name)

Specified by:

getNonBuiltinArray in interface BuiltinArrayContainer

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setNonBuiltinArray

public void setNonBuiltinArray(java.lang.String name,
                               CMLStringArray array)

Specified by:

setNonBuiltinArray in interface BuiltinArrayContainer

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deleteNonBuiltinArray

public void deleteNonBuiltinArray(java.lang.String name)

Specified by:

deleteNonBuiltinArray in interface BuiltinArrayContainer

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createArrayElement

public AbstractBuiltinContainer createArrayElement(org.w3c.dom.Document document)

Specified by:

createArrayElement in interface BuiltinArrayContainer

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Overview  Package   Class  Use  Deprecated  Index
Home >> All >> org >> xmlcml >> [ cml overview ]	PREV CLASS  NEXT CLASS
SUMMARY:  JAVADOC |  SOURCE |  DOWNLOAD | NESTED | FIELD | CONSTR | METHOD	DETAIL: FIELD | CONSTR | METHOD

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