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Uses of Package
org.xmlcml.cml

Classes in org.xmlcml.cml used by org.xmlcml.cml
AbstractAngle
          forces subclasses to implement AngleUnits
AbstractAtom
          
Base class for atomic information .
AbstractAtomRef
          some Objects (CMLAngle, CMLTorsion...) have references to Atoms.
AbstractBase
          The base class for all elementObjects mentioned in the CML DTD.
AbstractBond
          base class for Bond-based classes.
AbstractBuiltinContainer
          supports methods for getting and setting builtin child values.
AbstractNumericVal
          supports a number (either Float or Integer).
AbstractStringVal
          superclass of all interfaces which hold and manipulate strig values (which includes numeric values)
AttributeAtomRefs
          some Objects (e.g.
AttributeConvention
           
AttributeCount
           
AttributeDictRef
           
AttributeId
          identifies and supports those elements which can have id attributes
AttributeSize
          the size attribute is optional and gives the numebr of elements in an array.
AttributeTitle
           
AttributeUnits
           
BuiltinArrayContainer
           
BuiltinContainer
           
CMLAngle
          CORE Interface
DTD Class
supports angle element in CML DTD.
CMLAtom
          CORE Interface
DTD Class
Supports <atom> elements
CMLAtomArray
          DTD Class
this interface is only used if AtomArrays are stored as such in the DOM .
CMLAtomFactory
          Creates CMLAtom of appropriate subclass
CMLAtomParity
          CORE Interface
DTD Class
interface supporting atom-based parity .
CMLBond
          CORE Interface
DTD Class
main class: supports <bond> elements
CMLBondArray
          DTD Class
May become obsolete as bondArray is only syntactic
CMLBondFactory
          Creates Bonds of appropriate subclass
CMLBondStereo
          CORE Interface
DTD Class
supports bond-based stereochemistry
CMLCoordinate2
          CORE Interface
DTD Class
(x, y) coordinate
CMLCoordinate3
          CORE Interface
DTD Class
(x, y, z) coordinate
CMLCrystal
          CORE Interface
DTD Class
Supports a crystallographic unit cell (parameters and spacegroup).
CMLDocument
          CORE Interface
DTD Class
CMLElectron
          DTD Class
Semantics not yet formulated.
CMLException
          CORE Interface
CML-Specific exceptions may be thrown by CML-DOM classes and interfaces.
CMLFeature
          DTD Class
For macromolecules.
CMLFloatVal
          DTD Class
holds a float with max and minimum values
CMLFormula
          CORE Interface
DTD Class
Semantics being developed.
CMLIntegerVal
          holds an integer with max and minimum values
CMLIsotope
          CORE Interface
Class to hold varities of isotope information
CMLMolecule
          CORE Interface
CMLMolecule is the basic container for Atoms, Bonds, Electrons Angles, CMLTorsion, Sequences, Features, CMLCrystal and other objects.
CMLMoleculeFactory
          Creates Molecules of appropriate subclass
CMLSequence
           
CMLStringArray
           
CMLStringVal
           
CMLSymbol
          a placeholder for the need to hold symbolic values (e.g.
CMLTorsion
          CORE Interface
supports torsion angle element in CML DTD.
ConventionCriteria