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Package org.xmlcml.noncml

Interface Summary
CASTEP class for CASTEP files
CIF class for CIF
Dummy class for Dummy output files (NYI)
Format class for formatted files (e.g.
G94 class for G94 output files (NYI)
GAMESS class for GAMESS output files (NYI)
JCAMP class for JCAMP output files (NYI)
JME class for JME files (Peter Ertl's applet);
MDLMol class to read (? and write?) mdl-molfiles as described in chemical MIME.
MIF class for CIF
MMCIF class for CIF
MOL2 class for Sybyl MOL2 files (NYI)
MOPAC class for MOPAC output files (NYI)
MOPACF class for MOPAC output files (NYI)
MOPACIn class for MOPAC output files (NYI)
NonCMLDocument an interface for input/output of non-CML information (e.g.
PDB class for PDB files
PDBConect class to read (? and write?) PDBConect files (e.g.
PDBF class for PDB files using legacyParser
PreStyle class for formatted files (e.g.
SDF class to read and write MDL SDFiles
SMILES read/write SMILES
SwissF class for SwissProt files using legacyParser
VAMP class for VAMP files (NYI)
XYZ class for JMOL XYZ files
 

Class Summary
ABVal  
ATOMHETRecord  
BlockMatcher  
CASTEPImpl class to read (? and write?) CASTEP files
Chemime manages chemical/ files - still experimental.
CIFCore1DataBlockAdapter an adapter class to provide convenience methods for access to data in dataBlocks
CIFImpl class to read and write CIF files
DummyImpl class to read (? and write?) Dummy files
Field  
FormatImpl class to read formatted files
G94Impl class to read (? and write?) G94 files
GAMESSImpl class to read (? and write?) GAMESS files
JCAMPImpl class to read (? and write?) JCAMP files
JCAMPVocab  
JMEImpl class to read and write JME files (Peter Ertl's applet)
LigandConn individual ligand in _struct_conn
LineMatcher  
MDLMolImpl class to read (? and write?) mdl-molfiles as described in chemical MIME.
MIFCore1DataBlockAdapter an adapter class to provide convenience methods for access to data in dataBlocks
MIFImpl class to read and write CIF files
MMCIFImpl class to read and write CIF files
MOL2Impl class to read and write MOL2 files NYI
MOPACFImpl class to read MOPAC files using parser
MOPACImpl class to read (? and write?) MOPAC files
MOPACInImpl class to read (? and write?) MOPAC files
NonCMLDocumentImpl base class for all nonCML molecules
PDBConectImpl class to read (? and write?) PDBConect files (e.g.
PDBFImpl class to read PDB files using parser
PDBImpl  
PreStyleImpl class to read formatted files
SDFImpl class to read and write SDFiles
SMILESAtom parse a SMILES atom [....].
SMILESImpl class to read and write SMILES files
StringVector  
SwissFImpl class to read Swiss files using parser
VAMPImpl class to read (? and write?) VAMP files
XYZImpl class to read and write xyz files (Peter Ertl's applet)