Source code: org/biomage/Interface/HasImmobilizedCharacteristics.java
1 /***************************************************************************
2 * *
3 * C O P Y R I G H T N O T I C E *
4 * Copyright (c) 2001 by: *
5 * * The MicroArray Gene Expression Database group (MGED) *
6 * * Rosetta Inpharmatics *
7 * *
8 * All Rights Reserved. *
9 * *
10 * Permission is hereby granted, free of charge, to any person *
11 * obtaining a copy of this software and associated documentation files *
12 * (the "Software"), to deal in the Software without restriction, *
13 * including without limitation the rights to use, copy, modify, merge, *
14 * publish, distribute, sublicense, and/or sell copies of the Software, *
15 * and to permit persons to whom the Software is furnished to do so, *
16 * subject to the following conditions: *
17 * *
18 * The above copyright notice and this permission notice shall be *
19 * included in all copies or substantial portions of the Software. *
20 * *
21 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, *
22 * EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF *
23 * MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND *
24 * NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS *
25 * BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN *
26 * ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN *
27 * CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE *
28 * SOFTWARE. *
29 ***************************************************************************
30 * *
31 * Created by the create_mage_java_classes java program based on the *
32 * information in the xmi file created from the MAGE-OM UML model, *
33 * copyright European Bioinformatics Institute (EBI) for MGED and Rosetta *
34 * Informatics. *
35 * *
36 * The ideas and work are built on the previous work in perl of Jason *
37 * Stewart, Open Informatics, and Robert M. Hubley, Institute for Systems *
38 * Biology *
39 * *
40 * @author Michael Miller, Rosetta Inpharmatics *
41 * @version Revision: 1.0 *
42 * @date Thu, Feb 21, 2002 10:47:04 AM *
43 * *
44 ***************************************************************************
45 */
46
47 /**
48 * org.biomage.Interface
49 *
50 */
51 package org.biomage.Interface;
52
53 /**
54 * Import list for HasImmobilizedCharacteristics
55 *
56 */
57 import java.util.*;
58 import org.biomage.BioSequence.BioSequence;
59
60 public
61 interface HasImmobilizedCharacteristics
62 {
63 /**
64 * Inner list class for holding multiple entries for attribute
65 * immobilizedCharacteristics. Simply creates a named vector.
66 *
67 */
68 public
69 class
70 ImmobilizedCharacteristics_list extends Vector
71 {
72 }
73
74 /**
75 * Set method for immobilizedCharacteristics
76 * <p>
77 * @param value to set
78 * <p>
79 *
80 */
81 public
82 void
83 setImmobilizedCharacteristics(
84 ImmobilizedCharacteristics_list immobilizedCharacteristics
85 );
86
87 /**
88 * Get method for immobilizedCharacteristics
89 * <p>
90 * @return value of the attribute
91 * <p>
92 *
93 */
94 public
95 ImmobilizedCharacteristics_list
96 getImmobilizedCharacteristics();
97
98 /**
99 * Method to add BioSequence to ImmobilizedCharacteristics_list
100 *
101 */
102 public
103 void
104 addToImmobilizedCharacteristics(
105 BioSequence bioSequence
106 );
107
108 /**
109 * Method to add BioSequence at position to
110 * ImmobilizedCharacteristics_list
111 *
112 */
113 public
114 void
115 addToImmobilizedCharacteristics(
116 int position,
117 BioSequence bioSequence
118 );
119
120 /**
121 * Method to get BioSequence from ImmobilizedCharacteristics_list
122 *
123 */
124 public
125 BioSequence
126 getFromImmobilizedCharacteristics(
127 int position
128 );
129
130 /**
131 * Method to remove by position from ImmobilizedCharacteristics_list
132 *
133 */
134 public
135 void
136 removeElementAtFromImmobilizedCharacteristics(
137 int position
138 );
139
140 /**
141 * Method to remove first BioSequence from
142 * ImmobilizedCharacteristics_list
143 *
144 */
145 public
146 void
147 removeFromImmobilizedCharacteristics(
148 BioSequence bioSequence
149 );
150
151 }